DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sll and slc35a4

DIOPT Version :10

Sequence 1:NP_524389.1 Gene:sll / 42115 FlyBaseID:FBgn0038524 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001242972.2 Gene:slc35a4 / 777628 ZFINID:ZDB-GENE-061103-595 Length:314 Species:Danio rerio


Alignment Length:351 Identity:72/351 - (20%)
Similarity:138/351 - (39%) Gaps:82/351 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 AASTAPKRTSSQEAVQLLWCFGGLMISYLTWG---VLQEKIMTQNYLNFTGESAKF---KDSQFL 187
            :|..:|:  ||..|::|.|.| .|::..|.:|   .|.....||..:.|:..|...   ....|:
Zfish     5 SADESPE--SSSPALRLRWLF-LLLLLVLIYGSHAPLLSLCKTQAQIPFSASSCVLLIETSKLFI 66

  Fly   188 VFSNRLLAFLVA---LAYLQWQPSPVRHRAPLYKYSYASFSNIMSAWFQ-------YEALKFVNF 242
            .|::.|.:..|:   ::......||....|.||     :|:|.:..:.|       ::.|..:..
Zfish    67 SFASLLASGSVSTLRISISMTTASPYAVPAVLY-----AFNNHLVVFMQAYMDPSSFQVLSNLKI 126

  Fly   243 P-TQVLAKSCKIIPVMLMGKIMSKAKYESYEYVTALLISLGM-----IFFMSGSSDSSKASGVTT 301
            . |.:|..||       :||.:.:.::    :...||||.|:     .:.:.|..:::.   ..|
Zfish   127 AFTALLYTSC-------LGKRLHRRQW----FAMGLLISAGVSHSCFSYDLEGKQETAV---YIT 177

  Fly   302 LTGIFLLSMYMVFDSFTANWQGSLFKSYGMTPLQMMCGVNLFSSIFTGASLSM--------QGGF 358
            ..|:.|:.:|.......|.:...:.||..: ||.|.   |||...| |..:::        |.||
Zfish   178 SWGLLLVLVYCFVSGLAAVYTERVLKSQRL-PLSMQ---NLFLYAF-GVVVNLASHLSGGEQKGF 237

  Fly   359 MDS------LAFATEHPKFVFDMVVLSVCSAVGQLFIYHTIDVFGPVVFTIIMTLRQAVAIMLSC 417
            .:.      :..|.:....:...||:...:.:.:||:..:..:...|:...|:            
Zfish   238 FEGYSAVVWVIVAGQVANGLLMSVVMKHGTGITRLFVISSAMLVNAVLSWGIL------------ 290

  Fly   418 FIYQHSISLLG--IFGVLIVFVAIFL 441
                 .:.|.|  :|.|:::..|::|
Zfish   291 -----GVQLTGYFLFPVVLIGWAVYL 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sllNP_524389.1 UAA 144..444 CDD:462479 67/336 (20%)
slc35a4NP_001242972.2 None

Return to query results.
Submit another query.