DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmx and lbx2

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001007135.1 Gene:lbx2 / 64276 ZFINID:ZDB-GENE-001206-2 Length:257 Species:Danio rerio


Alignment Length:251 Identity:69/251 - (27%)
Similarity:107/251 - (42%) Gaps:57/251 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 QQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPTS--------SSSSGGGSSLTHHPHPHLTG---S 423
            |...::.::.|..|..|    ..:.::|.||.|        |.....||.........:||   |
Zfish    15 QSSGEERRRGPLDQLPP----PANSNKPLTPFSIEDILNKPSVKKSVGSLCPPRVLEKVTGSSAS 75

  Fly   424 HGGYLLPSSSNESDEE-------GEE--IIEEDDGTD-----GPSDSSSPHGDGNSKRKKKTRTV 474
            ..|...|||...:.||       |.|  :|:..:|.:     |...:        ||:::|:||.
Zfish    76 RNGISAPSSPLCALEELASKTFKGLEVSVIQAAEGREHINAFGQRQA--------SKKRRKSRTA 132

  Fly   475 FSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKR---QLAAELEAANM 536
            |:..|:::||..|..::|||.::|..:|..|.||..||..||||||.|.||   ::.|::|:...
Zfish   133 FTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESLKK 197

  Fly   537 ANMAHAAQRLVRVPVL--YHDGTTAGFVPPPPPHHHPMQYYAAARNTSPPRPPLSS 590
            . ...|.|:||.:..:  .|.|:     .|..|...|..:         |:.|.||
Zfish   198 I-PPQALQKLVSMEDMEDAHGGS-----GPISPSLSPRAF---------PQSPSSS 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 25/55 (45%)
lbx2NP_001007135.1 Required for convergent extension movement and hypaxial myogenesis during gastrulation. Required for the formation of thick and thin myofilaments. Required for myod1 expression in the pectoral fin bud. Required for continuous expression of cxcl12a in the posterior lateral mesoderm at the tail bud stage and in adaxial cells at the 10-somite stage. /evidence=ECO:0000269|PubMed:19216761, ECO:0000269|PubMed:22216300, ECO:0000269|PubMed:22406073 1..46 8/34 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 7/31 (23%)
Homeodomain 127..183 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..257 11/47 (23%)

Return to query results.
Submit another query.