DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and hoxa3a

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_571609.2 Gene:hoxa3a / 58049 ZFINID:ZDB-GENE-000823-3 Length:410 Species:Danio rerio


Alignment Length:372 Identity:90/372 - (24%)
Similarity:133/372 - (35%) Gaps:82/372 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 PNNNNNNSNTTASSNQ-----ASKSPSHHPLHPLYHP-----LGSQQQQQQQQQHQQHPQQQQHP 386
            |..:.|.....||..|     .::|..|.|...|..|     |.:..:..:..|.....|.....
Zfish    17 PYQSANGLGYDASQQQYLQALHAESEYHRPACSLQSPGISAGLHTSNEMSEVCQQINGTQATVTD 81

  Fly   387 QQQQQQHPHQPTTPTSSSSSGG----GSSLTHHPHPHLTGSHGGYLLP---SSSNESDEEGEEII 444
            ....:|.|..|:.|:|.||...    .|:..:..|...|.|...::.|   .|...:.::...||
Zfish    82 TSDNKQPPTAPSGPSSPSSLNQIPNIDSAAKNPVHVSPTPSTRKHIFPWMKESRQNTKQKSCSII 146

  Fly   445 EEDDGTDGPSDSSSPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTE 509
                ..:..:...||.|...|||   .||.::.||:.:||..|...|||....|..:|..|.|||
Zfish   147 ----SVESCAGDKSPPGSAASKR---ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTE 204

  Fly   510 TQVKIWFQNRRNKWKRQLAAELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVPPPPPH--HHPM 572
            .|:||||||||.|:|:                             |....|.:|.|...  |.|:
Zfish   205 RQIKIWFQNRRMKYKK-----------------------------DQKGLGMMPSPGAQSPHSPV 240

  Fly   573 QYYA--AARNTSPPRPPLSSLVXGVGCLATAPMSLLKPPNS-----MAHPPHPQPPPPAPLHMQQ 630
            ...:  .....|.....:.|||..|...:.:|.|..||.::     .::||....|||      |
Zfish   241 SLSSGGGGGGGSAYLSSMHSLVNSVTYDSPSPASYNKPQSNTYSLPTSYPPLNNCPPP------Q 299

  Fly   631 RSFLGCEQLTETDMDSDSEQERSHMMDDEDAAIDVEADEEQESASPV 677
            :.:.|....|       .|.:..|:..:.:....|:       .|||
Zfish   300 KRYQGTGTAT-------PEYDTHHIQGNNNYGTQVQ-------GSPV 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 26/55 (47%)
hoxa3aNP_571609.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..126 11/46 (24%)
Antp-type hexapeptide 127..132 1/4 (25%)
Homeodomain 164..220 CDD:459649 28/58 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..249 5/26 (19%)
DUF4074 346..408 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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