DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and barhl1b

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001018142.1 Gene:barhl1b / 553186 ZFINID:ZDB-GENE-060118-2 Length:323 Species:Danio rerio


Alignment Length:442 Identity:110/442 - (24%)
Similarity:143/442 - (32%) Gaps:167/442 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 STTGSNGFTSFSISSILSRSEPAKKNGAAGLITPIPQLPQPGAGGPQDAAMLSRLGFISQWGALA 288
            ||.||    ||.|.|:||.                    :||:            ..||:..:|.
Zfish     4 STNGS----SFGIDSLLSH--------------------RPGS------------PVISKGDSLV 32

  Fly   289 GRYAALCPPGWPWAPQRLPFH-SPTHDSSSTNTTENPPSPTSMSPNNNNNNSNTTASSNQASKSP 352
            |.    |         |.|.. ||..|..|  ...:||||                         
Zfish    33 GE----C---------RSPLEFSPRSDLES--GCSSPPSP------------------------- 57

  Fly   353 SHHPLHPLYHPLGSQQQQQQQQQHQQHP-QQQQHPQQQQQQHPHQPTTPTSS------------- 403
                         .::..:...|.|.|| ....|.|........||.|..||             
Zfish    58 -------------RRECVEDAAQRQGHPLAYASHLQHGPISAGSQPRTVASSFLIRDILADCKPL 109

  Fly   404 ------SSSGGGSSLTHHPHP-----HLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSS 457
                  ||:|         .|     .|.......|:....:.|..:.|..::|:...:..|...
Zfish   110 AACAPYSSNG---------QPTQEAGRLASKIADDLIEKIHSNSSSDSEYKVKEEGDREISSSRD 165

  Fly   458 SPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNK 522
            ||  ....|:.:|.||.|:..|:.|||.:|:.::|||..:|..|||||.||:||||.|:||||.|
Zfish   166 SP--QVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTK 228

  Fly   523 WKRQLAAELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVP------------PPPPHHHP---- 571
            ||||.|..||....|....|.||:...|..|.....:...|            |||....|    
Zfish   229 WKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPR 293

  Fly   572 --MQYYAAARNTSPPRPPLSSLVXGVGCLATAPMSLLKPPNSMAHPPHPQPP 621
              :.....|....||.||||.::                       |.|.||
Zfish   294 ILLHGLQGASEPPPPLPPLSGVL-----------------------PRPTPP 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 31/55 (56%)
barhl1bNP_001018142.1 Homeodomain 175..231 CDD:459649 31/55 (56%)

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