DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and barhl1b

DIOPT Version :9

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001018142.1 Gene:barhl1b / 553186 ZFINID:ZDB-GENE-060118-2 Length:323 Species:Danio rerio


Alignment Length:442 Identity:110/442 - (24%)
Similarity:143/442 - (32%) Gaps:167/442 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 STTGSNGFTSFSISSILSRSEPAKKNGAAGLITPIPQLPQPGAGGPQDAAMLSRLGFISQWGALA 288
            ||.||    ||.|.|:||.                    :||:            ..||:..:|.
Zfish     4 STNGS----SFGIDSLLSH--------------------RPGS------------PVISKGDSLV 32

  Fly   289 GRYAALCPPGWPWAPQRLPFH-SPTHDSSSTNTTENPPSPTSMSPNNNNNNSNTTASSNQASKSP 352
            |.    |         |.|.. ||..|..|  ...:||||                         
Zfish    33 GE----C---------RSPLEFSPRSDLES--GCSSPPSP------------------------- 57

  Fly   353 SHHPLHPLYHPLGSQQQQQQQQQHQQHP-QQQQHPQQQQQQHPHQPTTPTSS------------- 403
                         .::..:...|.|.|| ....|.|........||.|..||             
Zfish    58 -------------RRECVEDAAQRQGHPLAYASHLQHGPISAGSQPRTVASSFLIRDILADCKPL 109

  Fly   404 ------SSSGGGSSLTHHPHP-----HLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSS 457
                  ||:|         .|     .|.......|:....:.|..:.|..::|:...:..|...
Zfish   110 AACAPYSSNG---------QPTQEAGRLASKIADDLIEKIHSNSSSDSEYKVKEEGDREISSSRD 165

  Fly   458 SPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNK 522
            ||  ....|:.:|.||.|:..|:.|||.:|:.::|||..:|..|||||.||:||||.|:||||.|
Zfish   166 SP--QVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTK 228

  Fly   523 WKRQLAAELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVP------------PPPPHHHP---- 571
            ||||.|..||....|....|.||:...|..|.....:...|            |||....|    
Zfish   229 WKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPR 293

  Fly   572 --MQYYAAARNTSPPRPPLSSLVXGVGCLATAPMSLLKPPNSMAHPPHPQPP 621
              :.....|....||.||||.::                       |.|.||
Zfish   294 ILLHGLQGASEPPPPLPPLSGVL-----------------------PRPTPP 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeobox 471..524 CDD:278475 29/52 (56%)
barhl1bNP_001018142.1 Oxidoreductase_nitrogenase 48..>88 CDD:295466 11/79 (14%)
Homeobox 178..230 CDD:278475 29/51 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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