DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and barhl1a

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001017712.3 Gene:barhl1a / 550407 ZFINID:ZDB-GENE-050417-212 Length:299 Species:Danio rerio


Alignment Length:426 Identity:111/426 - (26%)
Similarity:135/426 - (31%) Gaps:167/426 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 SNGFTSFSISSILSR--SEPAKKNGAAGLITPIPQLPQPGAGGPQDAAMLSRLGFISQWGALAGR 290
            ||| :||.|.||||.  |.|....|...                                     
Zfish     4 SNG-SSFGIESILSHRASSPCMSKGECR------------------------------------- 30

  Fly   291 YAALCPPGWPWAPQRLPFHSPTHDSSSTNTTENPPSPTSMSPNNNNNNSNTTASSNQASKSPSHH 355
                       :|..|   ||..|..|  ...:||||                     .:|....
Zfish    31 -----------SPAEL---SPRSDLDS--GCSSPPSP---------------------RRSSVED 58

  Fly   356 PLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPTSS----------------- 403
            .:|.....||.....|..|                     ||.|.|||                 
Zfish    59 AVHRRARALGLDSPLQISQ---------------------QPRTVTSSFLIRDILADCKPLAACA 102

  Fly   404 --SSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSSSPHGDGNSK 466
              ||:|..:.........|           .||.|.:....:.:|.|     .:.||.....||:
Zfish   103 PYSSTGQSAQDAEDCMDKL-----------HSNSSSDSEYRVKDEAD-----REISSSRDSPNSR 151

  Fly   467 RKK--KTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAA 529
            .||  |.||.|:..|:.|||.:|:.::|||..:|..|||||.||:||||.|:||||.|||||.|.
Zfish   152 LKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV 216

  Fly   530 ELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVP------------PPPPHHHPMQYYAAARNTS 582
            .||....|....|.||:...|..|.....:...|            ||||...|:          
Zfish   217 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGPGLYLYRGPSAPPPPVQRPL---------- 271

  Fly   583 PPRPPLSSLVXGVGCLATAPMSLLKPPNSMAHPPHP 618
            .||..|..|..|     ..|.||     |...|.||
Zfish   272 VPRILLHGLQGG-----GDPASL-----SGVIPRHP 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 32/57 (56%)
barhl1aNP_001017712.3 None

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