DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmx and Abd-B

DIOPT Version :9

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster


Alignment Length:587 Identity:132/587 - (22%)
Similarity:183/587 - (31%) Gaps:223/587 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LHHHLQHHLSSLGSHPVALHHALHTFGHLHPAHGATHPAL------LQHAL-------------- 130
            ||||..|||.          ..|||..|.|.|    ||.|      .|||:              
  Fly    31 LHHHAHHHLP----------QPLHTTSHHHSA----HPHLQQQQQQQQHAVVASSPSSVLQQQQQ 81

  Fly   131 --------TPT----------------------GQQQQQQLQVQQQHQQSH-----VERLSPPMK 160
                    |||                      ..|||||||.|||.||..     |.....|.:
  Fly    82 QSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQQQQLATTPVAGALSPAQ 146

  Fly   161 SPERNGGDEVQGHSLNNNNSKALNHNNTCASAAAAAAAAAVAAANLSNNSNDSNGSSGGGGGKST 225
            :|  .|....|...|.:.:.:.|....|..|.|:.      |::||.......|.:...|..:..
  Fly   147 TP--TGPSAQQQQHLTSPHHQQLPQQQTPNSVASG------ASSNLQQQQQQQNAAVAPGQTQIV 203

  Fly   226 TGSNGFTSFSISSILSRSE-------------PAKKNGAAGLITPIPQLPQPGAGGPQDAAMLSR 277
            ..:.  .|.|.||:.|:.|             ||.:.|             ||......||:...
  Fly   204 APTT--ASVSPSSVSSQKEDINMSIQLAPLHIPAIRAG-------------PGFETDTSAAVKRH 253

  Fly   278 L--------GFISQWGALAGRY-----------AALCPPGWPWAPQRLPFHSPTHDSSSTNTTEN 323
            .        ||...:|  :|.|           ....|.|..|.|...|              :.
  Fly   254 TAHWAYNDEGFNQHYG--SGYYDRKHMFAYPYPETQFPVGQYWGPNYRP--------------DQ 302

  Fly   324 PPSPTSMSPNNNNNNSNTTASSNQA---SKSPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQH 385
            ..|..:.:...|....:.:|::.|:   :.:.|:.|  |.|...|..:                 
  Fly   303 TTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEP--PTYSSPGGLR----------------- 348

  Fly   386 PQQQQQQHPHQPTTPTSSSSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGT 450
                     ..|:...|||.:.||.|:             |.:.|.:.|....|....:      
  Fly   349 ---------GYPSENYSSSGASGGLSV-------------GAVGPCTPNPGLHEWTGQV------ 385

  Fly   451 DGPSDSSSPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIW 515
                          |.|||  |..:|:.|..:||..|....|:|..:|..||.:|:|||.|||||
  Fly   386 --------------SVRKK--RKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIW 434

  Fly   516 FQNRRNKWKRQLAAELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVPPPPPHHH-----PMQYY 575
            |||||.|.|:....:....|..|.:.:.....:....:|.|            ||     .|.::
  Fly   435 FQNRRMKNKKNSQRQANQQNNNNNSSSNHNHAQATQQHHSG------------HHLNLSLNMGHH 487

  Fly   576 AA 577
            ||
  Fly   488 AA 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeobox 471..524 CDD:278475 26/52 (50%)
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 27/54 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I5492
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.050

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