Protein Alignment Hmx and vnd

DIOPT Version :10

• Sequence 1: NP_001262674.1
• Gene: Hmx / 42110
• FlyBaseID: FBgn0264005
• Length: 718
• Species: Drosophila melanogaster
• Sequence 2: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Alignment Length: 666
• Identity: 161/666 - (24%)
• Similarity: 228/666 - (34%)
• Gaps: 237/666 - (35%)

  Fly     2 SSSEAEVDISVVSSPEPSPLGAAARDSPLLARSPARSADGSSPPATPTHRS----NTPNTAAGTP 62
            ||..:...||.:.:.|.|.|..||..:...|...:..:..|:..:|..||.    .:|:..:.||
  Fly   194 SSQRSGFHISDILNLEGSELKNAAAAAAAAAHHGSDLSHHSASESTSGHRGQGSHTSPSALSPTP 258

  Fly    63 TTSASGGNHFHHSPSGGAVPPAVLHHHLQHHLSSLGSHPVALHHALHTFGHLHPAHGATHPALLQ 127
             ...|...|.:.|.:||....|..|...:||...  |||...|.  |...|.||
  Fly   259 -AGVSADEHHNGSGTGGGAGEADHHSTTEHHAPP--SHPQQQHP--HHQQHHHP----------- 307

  Fly   128 HALTPTGQQQQQQLQVQQQHQQSHVERLSPPMKSPERNGGDEVQGHSLNNNNSKAL--NHNNTCA 190
            |.|.|           ||.|||:    ::|...:..::|  |.|.|:..|..:..|  :||
  Fly   308 HLLLP-----------QQHHQQA----VAPLPLAHHQSG--EAQSHAHANAAAAHLLASHN---- 351

  Fly   191 SAAAAAAAAAVAAANLSNNSNDSNGSSGGGGGKSTTGSNGFTSFSISSILSRSEPAKKNGAAGLI 255
                |||||||||...
  Fly   352 ----AAAAAAVAAGQY------------------------------------------------- 363

  Fly   256 TPIPQLPQ--PGAGGPQDAA-------MLSRLGFISQWGALAGRYAALCPPGWPWAPQRLPFHSP 311
              :|.||:  ||:.|.:.::       ||..          :||.|        |..:
  Fly   364 --LPNLPKNFPGSFGDEMSSYHHMAQTMLQH----------SGRSA--------WIKE------- 401

  Fly   312 THDSSSTNTTENPPSPTSMSPNNN-------NNNSNT-------------TASSNQASKSPSHHP 356
                :....|:.|.||.|.||..:       .:|..|             :|.|:..|...:.|.
  Fly   402 ----NELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDALHT 462

  Fly   357 LHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPTSSSSSGGGSSLTH--HPHPH 419
            ||      ||                                   |.:.|.||:...|  |.:.:
  Fly   463 LH------GS-----------------------------------SGNGSAGGAPTAHALHNNNN 486

  Fly   420 LTGSHGGYLLP------SSSNESDEEGEEIIEED----DGTDGPSDSSSPHGDGNSKRKKKTRTV 474
            .|.::..:.|.      :.|...|...|:.||||    |..||.....:...||...:|:|.|.:
  Fly   487 NTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLPNKKRKRRVL 551

  Fly   475 FSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELEAANMANM 539
            |::||.::||..|..:||||:.||..||:.:|||.|||||||||.|.|.||   |:.|.....
  Fly   552 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR---AQNEKGYEG-- 611

  Fly   540 AHAAQRLVRVPVLYHDGTTAGFVPPPPPHHHPMQYYAAARNTSP-----PRPPL-SSLVXGVGCL 598
                          |.|...|....|   |||....:..|...|     .:|.| .|.. |..|:
  Fly   612 --------------HPGLLHGHATHP---HHPSALPSPRRVAVPVLVRNGKPCLGDSSKLGADCV 659

  Fly   599 ATAPMSLLKPPNSMAH 614
            :.:..:.....|:.||
  Fly   660 SVSSATATAMQNAAAH 675

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hmx	NP_001262674.1	Homeodomain	469..525	CDD:459649	30/55 (55%)
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	30/55 (55%)