DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmx and nkx2.7

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_571494.1 Gene:nkx2.7 / 30694 ZFINID:ZDB-GENE-990415-179 Length:269 Species:Danio rerio


Alignment Length:227 Identity:74/227 - (32%)
Similarity:99/227 - (43%) Gaps:30/227 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 QQQHQQHP------QQQQHPQQQQQQHPHQPTTPTSSSSSGGGSSLTHHPHPHLTGSH---GGYL 428
            :||...:|      :|...|.|..|....|.|...|       ..|.:.|...:.|..   ..:.
Zfish    20 EQQQALNPGVFMGVEQDSVPLQSLQLQCMQNTLSRS-------LDLLYSPEKGIPGEQVKCDDFD 77

  Fly   429 LPSSSNESDEEGEEIIEEDDGTDGPSDSSSPHGDGNSKRKK-------KTRTVFSRAQVFQLEST 486
            :..||..|..|.|....|:......:|||....:|.:.|:|       |.|.:||:.|||:||..
Zfish    78 IVRSSCGSPTEEEMDANEETSMCPFTDSSYSSKNGETLREKPKQRLRRKPRVLFSQTQVFELERR 142

  Fly   487 FDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELEAANMANMAHAAQRLVRVPV 551
            |..:||||:.||..||.:|:||.|||||||||||.|.|||...:       ::..|..|.|.|||
Zfish   143 FKQQRYLSAPERDHLALALKLTSTQVKIWFQNRRYKCKRQRQDK-------SLELAGPRRVAVPV 200

  Fly   552 LYHDGTTAGFVPPPPPHHHPMQYYAAARNTSP 583
            |..||......|......:|...|..:...:|
Zfish   201 LVRDGKPCHGAPYNVTVSYPYNNYYNSYGNNP 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 34/62 (55%)
nkx2.7NP_571494.1 COG5576 87..210 CDD:227863 54/129 (42%)
Homeodomain 125..181 CDD:459649 33/55 (60%)

Return to query results.
Submit another query.