DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and hoxb4a

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_571193.1 Gene:hoxb4a / 30340 ZFINID:ZDB-GENE-990415-105 Length:246 Species:Danio rerio


Alignment Length:204 Identity:63/204 - (30%)
Similarity:88/204 - (43%) Gaps:43/204 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 NQASKSPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQ---HPQQQQQQHPHQPTT-------- 399
            :|:...|||   .|.|:   |.|:|....||:....|:.   .|.....|.|.||..        
Zfish    24 SQSDYLPSH---SPDYY---SAQRQDPSFQHESIYHQRSGCADPPYSSCQGPGQPAAVISPRGHV 82

  Fly   400 -PTSSSS------SGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGP---- 453
             ||::.|      |....|:|..|.|....:      |:|.|.|     .:....|....|    
Zfish    83 LPTTALSTPLPEPSHHCDSVTPSPPPACGQT------PTSQNTS-----TVSSRKDPVVYPWMKK 136

  Fly   454 --SDSSSPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWF 516
              .:..||:..|.  ..|::||.::|.||.:||..|...|||:...|..:|.:|.|:|.|:||||
Zfish   137 VHVNIVSPNYSGG--EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWF 199

  Fly   517 QNRRNKWKR 525
            ||||.|||:
Zfish   200 QNRRMKWKK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 28/55 (51%)
hoxb4aNP_571193.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..125 29/117 (25%)
Antp-type hexapeptide 130..135 1/4 (25%)
Homeodomain 152..208 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..246
Blue background indicates that the domain is not in the aligned region.

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