DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmx and nob-1

DIOPT Version :9

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001369824.1 Gene:nob-1 / 176641 WormBaseID:WBGene00003779 Length:243 Species:Caenorhabditis elegans


Alignment Length:278 Identity:65/278 - (23%)
Similarity:102/278 - (36%) Gaps:95/278 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 WPWAPQRLPFHSPTHDSSSTNTTENPPSPTSMSPNNNNNNSNTTASSNQASKSPSHHP------- 356
            ||.|...:|  |...:|.|...:|...|| .::|::.......||  ......||..|       
 Worm    31 WPSAAAAIP--SIQGESRSERESETGSSP-QLAPSSTGMVMPGTA--GMYGFGPSRMPTANEFGM 90

  Fly   357 -LHPLY-----HPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPTSSSSSGGGSSLTHH 415
             ::|:|     :||.|.......|                   |:|.|              .::
 Worm    91 MMNPVYTDFYQNPLASTGWYSYGQ-------------------PYQFT--------------ANY 122

  Fly   416 PHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSSSPHG----------DGNSKRKKK 470
            ..|.|.|:.....:|:                  |.|.|.:::|:.          ||     ||
 Worm   123 SIPSLDGNLSDITIPT------------------TAGSSAATTPNAAMHLPWAISHDG-----KK 164

  Fly   471 TRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELEAAN 535
            .|..:.:.|:.:||..:.:.:||::..|:.|:|.|.|.|.|||:||||||.|.|:     |...:
 Worm   165 KRQPYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKVWFQNRRMKDKK-----LRQRH 224

  Fly   536 MANMAHAA------QRLV 547
            .....|.|      :||:
 Worm   225 SGPFPHGAPVTPCIERLI 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeobox 471..524 CDD:278475 22/52 (42%)
nob-1NP_001369824.1 Homeobox 165..219 CDD:395001 22/53 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 90 1.000 Inparanoid score I3677
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.