DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and php-3

DIOPT Version :9

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_499573.1 Gene:php-3 / 176640 WormBaseID:WBGene00004024 Length:275 Species:Caenorhabditis elegans


Alignment Length:393 Identity:96/393 - (24%)
Similarity:140/393 - (35%) Gaps:149/393 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 VQQQHQQSHVERLSPPMKSPERNGGDEVQGHSLNNNNSKALNHNNTCASAAAAAAAA------AV 201
            :||....|::    ||   |.....|..:.|. .:..|..:..:::.|:.::|||||      :.
 Worm     5 MQQMMNNSNM----PP---PFVKSSDSHETHD-ESPTSPFIKRSDSPATTSSAAAAAMQHNFWST 61

  Fly   202 AAANLSNNSNDSNGSSGGGGGKSTTGSNGFTSFSISSILSRSEPAKKNGAAGLITPIPQLPQPGA 266
            .||.|..:   .:||||...|.|::.||.         |||:: |..:...|..|         |
 Worm    62 RAAQLQQS---VSGSSGVSSGSSSSASNN---------LSRTQ-ADNHSERGSDT---------A 104

  Fly   267 GGPQDAAMLSRLGFISQWGALAGRYAALCPPGWPWAPQRLPFHSPTHDSSSTNTTENPPSPTSMS 331
            ..||.|.:.:..|......|.||.|               ||::...           |:..:|.
 Worm   105 SSPQVAPLPTSSGMSMPAAAAAGMY---------------PFNAGRF-----------PTEFNMM 143

  Fly   332 PNNNNNN---SNTTASSNQASKSPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQH 393
            .|.:..|   ||:.|    ||..|..:|                                  ||:
 Worm   144 VNQSMYNDFYSNSLA----ASSWPYSYP----------------------------------QQY 170

  Fly   394 PHQPTTPTSSSSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSSS 458
            |                             ...|.:||.....::.|:  :|.         :||
 Worm   171 P-----------------------------FANYSMPSLDGNLNDGGQ--LEW---------TSS 195

  Fly   459 PHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKW 523
            .|    :.|||  |..:::||..:||..|....|:|..:|..||..|.|||.||||||||||.|.
 Worm   196 SH----AMRKK--RKPYTKAQTLELEKEFLYNTYVSKQKRWELAKYLHLTERQVKIWFQNRRMKD 254

  Fly   524 KRQ 526
            |:|
 Worm   255 KKQ 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeobox 471..524 CDD:278475 26/52 (50%)
php-3NP_499573.1 Homeobox 202..256 CDD:365835 27/55 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 90 1.000 Inparanoid score I3677
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.960

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