DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmx and Hoxa3

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001300749.1 Gene:Hoxa3 / 103690130 RGDID:1561431 Length:444 Species:Rattus norvegicus


Alignment Length:442 Identity:107/442 - (24%)
Similarity:152/442 - (34%) Gaps:156/442 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 SSGGGGGKSTTGSNGFT------SFSISSILSRSEPAKKNGAAGLITPIPQLPQPGAGGPQDAAM 274
            ||...||.....:|||.      .::.|:.|..........|..|.:|......|.:....:|.:
  Rat     9 SSAIYGGYPYQAANGFAYNASQQPYAPSATLGTDGVEYHRPACSLQSPASAGAHPKSHELSEACL 73

  Fly   275 LSRLGFISQWGALAGRYAALCPPGW-------------PWAPQRLPFHSPTHDSSSTNTTENPPS 326
            .:..|..||            |||.             |.|||  |...|....:.|...  ||.
  Rat    74 RTLSGPPSQ------------PPGLGDPPLPPPPPQAAPPAPQ--PPQPPPQPPAPTPAA--PPP 122

  Fly   327 PTSMSPNNNNNNSNTTASSNQASKSPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQ 391
            |:|:||..:.|::.|.||:   :|||.      |..|...:|.....::.:|:.:|:        
  Rat   123 PSSVSPPQSANSNPTPAST---AKSPL------LNSPTVGKQIFPWMKESRQNTKQK-------- 170

  Fly   392 QHPHQPTTPTSSSSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDS 456
                     ||.||||                                           :..:..
  Rat   171 ---------TSGSSSG-------------------------------------------ESCAGD 183

  Fly   457 SSPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRN 521
            .||.|..:|||   .||.::.||:.:||..|...|||....|..:|..|.|||.|:||||||||.
  Rat   184 KSPPGQASSKR---ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 245

  Fly   522 KWKRQLAAELEAANMANMAHAAQRLVRVPVLYHDGTTAGFVPPPPPHHHPMQYYAAARNTSPPRP 586
            |:|:    :.:...|.                   |::|...|             :|:..||..
  Rat   246 KYKK----DQKGKGML-------------------TSSGGQSP-------------SRSPVPPGA 274

  Fly   587 -----PLSSLVXGVGCLATAPMSLLKPP-NSMAHPP--HPQP-----PPPAP 625
                 .:.||| .|.....:|....||| .:...||  :|.|     |||.|
  Rat   275 GGYLNSMHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSCAPPPPP 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 26/55 (47%)
Hoxa3NP_001300749.1 COG5576 <182..309 CDD:227863 48/165 (29%)
Homeodomain 193..249 CDD:459649 28/58 (48%)
DUF4074 378..442 CDD:463833
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.