DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmx and hoxa3

DIOPT Version :10

Sequence 1:NP_001262674.1 Gene:Hmx / 42110 FlyBaseID:FBgn0264005 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:445 Identity:108/445 - (24%)
Similarity:151/445 - (33%) Gaps:163/445 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 SSGGGGGKSTTGSNGFT------SFSISSILSRSEPAKKNGAAGLITPIPQLPQPGAGGPQDAA- 273
            ||...||....|:||||      .:..||.|..:|..:         |...|..||:..|...| 
 Frog     9 SSAIYGGYPYQGANGFTYNASQQQYPPSSSLLETEYHR---------PACSLQSPGSAVPHHKAN 64

  Fly   274 --MLSRLGFISQWGALAGRYAALCPPGWPWAPQRLPFHSPTHDSSSTNTTENPPSPTSMSPNNNN 336
              ..|.:..|:.....|           |..|::.|            |.:.|  |.|:||....
 Frog    65 DINESCMRTINSQSNQA-----------PVIPEQQP------------TPQGP--PPSVSPPQTT 104

  Fly   337 NNSNTTASSNQASKSPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTPT 401
            :|: .|||||:|:...|         |..|:|.....::.:|:.:||:                .
 Frog   105 SNA-ATASSNKATSITS---------PTMSKQIFPWMKESRQNTKQQK----------------A 143

  Fly   402 SSSSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGTDGPSDSSSPHGDGNSK 466
            .|||||                                           :..:...||.|..:||
 Frog   144 GSSSSG-------------------------------------------ESCAGDKSPPGQSSSK 165

  Fly   467 RKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAEL 531
            |   .||.::.||:.:||..|...|||....|..:|..|.|||.|:||||||||.|:|:.     
 Frog   166 R---ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD----- 222

  Fly   532 EAANMANMAHAAQRLVRVPV-----------LYHDGTTAGFVPPPPP---HHHPMQY-----YAA 577
            :.......:...|...|.||           ::....:..:.|..||   .|||..|     |.:
 Frog   223 QKGKSMMTSSGGQSPCRSPVPTPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHHPSAYGVPAPYPS 287

  Fly   578 ARNTSPPRPPLSSLVXGVGCLATAPMSLLKPPNSMAHPPHPQPPPPAPLHMQQRS 632
            ..|:.||.....|     |..|..|          .:.|||         :||.|
 Frog   288 PHNSCPPHQKRYS-----GTAAVTP----------EYEPHP---------LQQSS 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmxNP_001262674.1 Homeodomain 469..525 CDD:459649 26/55 (47%)
hoxa3NP_001120901.1 Homeodomain 165..221 CDD:459649 28/58 (48%)
DUF4074 343..404 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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