DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Igsf9

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001139272.1 Gene:Igsf9 / 93842 MGIID:2135283 Length:1179 Species:Mus musculus


Alignment Length:1349 Identity:261/1349 - (19%)
Similarity:427/1349 - (31%) Gaps:420/1349 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   347 PQVQIV--NSGGTANFNCTTTGSA----IDAIDWLHNG--KPLQANNALTTGR------DNIRFL 397
            |:|..|  .:|.:|...|.....|    :..|:||..|  .|:.....|.:.|      ..:|..
Mouse    24 PEVVSVVGRAGESAVLGCDLLPPAGHPPLHVIEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRLQ 88

  Fly   398 SKSSLLVQNVGRRDRGVYQC--LVENQRASAQAMAELKLGDTV-------------PELIYTFIE 447
            :.:||.::.:...|:|.|:|  |..:|.:..|..|.   |..|             |.|:.    
Mouse    89 TGASLQIEGLRVEDQGWYECRVLFLDQHSPEQDFAN---GSWVHLTVNSPPQFQETPPLVL---- 146

  Fly   448 QNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPD 512
             .|:....::|:|.|.|||.|...|....|.:..       ..||....:|.    |.|..|...
Mouse   147 -EVKELEAVTLRCVARGSPQPYVTWKFRGQDLGK-------GQGQVQVQNGT----LWIRRVERG 199

  Fly   513 DGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAV--AGEDIIVHCPFAGYPVEQIRWEKA 575
            ..|.|.|.||:|.||:.|:.:|.|.|||.: .:.|..:.  :.:|:.:.|....||.        
Mouse   200 SAGDYTCQASSSEGSITHATQLLVLGPPVI-VVPPSNSTVNSSQDVSLACRAEAYPA-------- 255

  Fly   576 HQELTTS------NHYELASVAD------GGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQL 628
              .||.|      |.:.::.:..      .|.|.::..:|. |.|.|||:..:...........|
Mouse   256 --NLTYSWFQDGVNVFHISRLQSRVRILVDGSLWLQATQPD-DAGHYTCVPSNGFLHPPSASAYL 317

  Fly   629 NVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLV 693
            .|..|..:........|..|.|..|.|.|.:....::.:|.||..:                   
Mouse   318 TVLYPAQVTVMPPETPLPTGMRGVIRCPVRANPPLLFVTWTKDGQA------------------- 363

  Fly   694 FKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPT 758
                                        ||:...|.|...|                 ||     
Mouse   364 ----------------------------LQLDKFPGWSLGP-----------------EG----- 378

  Fly   759 ITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIG-AGLKKTIRINVNEPARF- 821
                                  ||::.|..:|..|.|.|...|.:| ||.....::.:..|..| 
Mouse   379 ----------------------SLIIALGNENALGEYSCTPYNSLGTAGPSPVTQVLLKAPPAFI 421

  Fly   822 EQSARNISSRRNDPVTLDCHAKGDEPITIGWT------QNNGRIDLNNFRFSIAEMKTEKGVDSQ 880
            :|............:.:.|.|:||.|..:.|.      |...::|.||                .
Mouse   422 DQPKEEYFQEVGRELLIPCSARGDPPPIVSWAKVGRGLQGQAQVDSNN----------------S 470

  Fly   881 LTIGHSDRHDSGVYRCIAENPYGR---AEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFD 942
            |.:....:...|.:.|.|.|...|   :..:..|...  |...:::.:..: .:...:||...||
Mouse   471 LVLRPLTKEAQGRWECSASNAVARVTTSTNVYVLGTS--PHVVTNVSVVPL-PKGANVSWEPGFD 532

  Fly   943 GNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPA 1007
            |     .||.:: ::.|.........|..||    :::::|   |..::       .:|.||...
Mouse   533 G-----GYLQRF-SVWYTPLAKRPDRAHHDW----VSLAVP---IGATH-------LLVPGLQAH 577

  Fly  1008 TTFLIRMQAINEIERSAYTEAIV-----LKTQEEA----PTEAP-------SNVQVQTGGESELI 1056
            ..:...:.|.|::....::|.::     |.|...|    |||.|       ..|.|:|  ...::
Mouse   578 AQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAAPGLPPTEIPPPLSPPRGLVAVRT--PRGVL 640

  Fly  1057 VTWQIPPRESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAV 1121
            :.|.  |.|...|.|.||.:   |.:|......:::..:..|.:      :..:.||.|...|..
Mouse   641 LHWD--PPELIPGRLDGYIL---EGRQGSQGWEILDQGVAGTEI------QLLVPGLIKDVLYEF 694

  Fly  1122 TIRAM-NSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKI 1185
            .:.|. :|:.|.|.:.|...|:  |: |..|.......|..|        |.|   .|::.|...
Mouse   695 RLVAFADSYVSDPSNVANISTS--GL-EVYPSRTQLPGLLPQ--------PVL---AGVVGGVCF 745

  Fly  1186 LYRPIVHQIDFPAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATG-DGLASHPLFCQTDDDVP 1249
            |...::..|.....:..:|.:.       .|:........|.::..| .|..|.|     ....|
Mouse   746 LGVAVLVSILAACLMNRRRAAR-------RHRKRLRQDPPLIFSPRGKSGSHSAP-----GSGSP 798

  Fly  1250 DAPAAIKAAALTADSILISWL-------------TPKNRNGIISHYTVYSREAGR--------KG 1293
            |:....|.......|:..|.|             :|..| |.:....:.....||        ..
Mouse   799 DSVTKFKLQGSPVPSLRQSLLWGEPARPPSPHPDSPLGR-GPLPLEPICRGPDGRFVMGPTVAPS 862

  Fly  1294 QAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQ 1358
            |.|..:.|         .|.|:.|:.....|..|:|:..|..:|..:          ..|:..||
Mouse   863 QEKLCLER---------SEPRTSAKRLAQSFDCSSSSPSGVPQPLCI----------TDISPVGQ 908

  Fly  1359 ----VVRKAVGTGLVLECLAV----------------------------GNPTPRARWL-TRDRP 1390
                |.....|.|.:|:.|::                            ..|.|.:.:| ..|.|
Mouse   909 PLAAVPSPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPAPPPDFMDSQPCPTSSFLPPPDSP 973

  Fly  1391 ----------------VTFSPFYEVTNEGNLKIHRVEGSLS----GNYTCTANNLFGSDEIQYQV 1435
                            |:..|.|....:..|:...:.|.||    |:.|..::   |.....:  
Mouse   974 PANLRAVLPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQSS---GRGSASF-- 1033

  Fly  1436 IAMKPPSAPQIIVQYASADSIRVSWDAPDDGG---APLQGYTISYHTAGESWSITELLPENNAFT 1497
              ::|||.                  ||..||   :|..|.|.|:.:..|.|...|         
Mouse  1034 --LRPPST------------------APSAGGSYLSPAPGDTSSWASGPERWPRRE--------- 1069

  Fly  1498 ISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNANELIAT 1546
                     :::.:|...    ..:.:|...|.    |:.|...||:.|
Mouse  1070 ---------HVVTVSKRR----NTSVDENYEWD----SEFPGDMELLET 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352 25/101 (25%)
Ig 358..431 CDD:143165 20/86 (23%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 16/77 (21%)
I-set 634..724 CDD:254352 10/89 (11%)
ig 645..712 CDD:278476 9/66 (14%)
IG_like 734..815 CDD:214653 14/81 (17%)
Ig 745..815 CDD:299845 13/70 (19%)
I-set 820..913 CDD:254352 19/102 (19%)
Ig 838..920 CDD:299845 18/90 (20%)
FN3 917..1033 CDD:238020 21/120 (18%)
FN3 1040..1142 CDD:238020 24/109 (22%)
fn3 1150..1237 CDD:278470 14/87 (16%)
FN3 1263..1345 CDD:238020 19/102 (19%)
Ig 1350..1436 CDD:299845 23/138 (17%)
IG_like 1358..1436 CDD:214653 21/130 (16%)
FN3 1441..1530 CDD:238020 15/91 (16%)
FN3 1542..1620 CDD:238020 3/5 (60%)
Igsf9NP_001139272.1 IG_like 28..110 CDD:214653 19/81 (23%)
Ig 136..223 CDD:386229 28/102 (27%)
Ig_3 227..305 CDD:372822 18/89 (20%)
Ig 341..404 CDD:386229 22/153 (14%)
Ig 436..500 CDD:319273 16/79 (20%)
FN3 508..599 CDD:238020 20/111 (18%)
FN3 625..715 CDD:238020 22/102 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 767..807 9/51 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 819..842 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 942..974 4/31 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1079 18/109 (17%)
PDZ-binding 1177..1179
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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