DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and dscama

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:2161 Identity:616/2161 - (28%)
Similarity:976/2161 - (45%) Gaps:326/2161 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ALLLGALLLAVLATPLLATSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGS 78
            |::....:|.||:..|.::.     .|:......::|.:.||..|.|.|...||..:.|.|..|.
Zfish     5 AIIFFQCILNVLSEDLHSSL-----YFVNASLQEVVFASTTGTLVPCPAAAVPPATLRWYLATGE 64

  Fly    79 LATQVPGLRKISGNGTL---HFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQF 140
            .:..|||:|.:..||||   ||||   ..:...:|:.||.|.|.|.:|.:.|::|.:.||:|..:
Zfish    65 ESYNVPGIRHVHPNGTLQIFHFPP---SSFSKVIHDNTYYCTAENPSGKIRSQDVHIKAVLREPY 126

  Fly   141 HVHVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDLYVRS 205
            .|.|.:.....|:.|:.||.||..|..|:.|.||.|....|      |:|...::.::|.||:..
Zfish   127 TVRVADQTAMRGSVAVFKCIIPSSVENYITVVSWERDTVPL------VSGARFLITSTGALYILD 185

  Fly   206 VRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRT----TQKPVMEIHVERGNDVHL 266
            |:.||.|..:.|:..:....|.::|::..|.|.....|.||..    .::.||..|     .|.|
Zfish   186 VQKEDELFNYRCMTRHRYTSETRQSNSARLFVPADPSNSAPAILDGFEKREVMASH-----RVEL 245

  Fly   267 PCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRI 331
            ||...|:|.|.:.|.:.:     .|:.|..|...|.|.|||:.|...|.|.::|:..|.:|...:
Zfish   246 PCKASGHPAPKYRWLKNN-----RPLESDSRFRQSVTGLLIERAQPSDTGSYVCEVWNSYGNAEV 305

  Fly   332 EIRLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRF 396
            ..||:|...:...:.|:....:.|...:.:|:.|||....:.|..||      :.:.||. |||.
Zfish   306 IGRLTVKEPLKAVVSPRKVKGSVGSQVSLSCSVTGSDEFELSWYRNG------DKINTGA-NIRM 363

  Fly   397 --LSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLK 459
              ::|.:|::..:.:.|.|||||.....:.|||...::.|.|..|:::..|.|:.|.|...:||.
Zfish   364 NGINKENLVMDGMAKSDGGVYQCFSRKAKMSAQDFVQVILEDGTPKILSAFSEKVVGPNDFVSLT 428

  Fly   460 CSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNS 524
            |...|:|.|...|.||.:.:...|.|.   |...:...|:|:|:|||||::..|.|:|:|..:||
Zfish   429 CHVKGTPQPAITWTLDDEVVAKDSRHR---IVHSITAEGNVVSYLNISHIQVRDSGVYRCTCNNS 490

  Fly   525 MGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELAS 589
            .|:|.:.||:||.|...:|.:..:.|:||.|:.:||...|||...|:|.| :..|...|..:.| 
Zfish   491 AGTVSYQARINVRGSADIRPMKNLTAIAGWDMYIHCHVIGYPYYSIKWFK-NSNLLPFNDRQRA- 553

  Fly   590 VADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQIT 654
            ..:.|.|.:.||:...|:|.|:|.|:.:......:.:.:.|..||.|:||:||: ...|.|..:.
Zfish   554 FENNGTLKLLNVQKELDEGEYSCHVQVQPQLFKNQSVHVTVKVPPFIQPFEFPR-YSIGHRVFVP 617

  Fly   655 CAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYT 719
            |.|.|||:||..:|:||..||.:||.:|....:|.|.|...::...|:|.|||.|.|.||.|.|.
Zfish   618 CVVRSGDLPISITWEKDGKSINASLGVTIDNIDFTSSLRISNLQRVHNGTYTCIAQNDAAVVKYQ 682

  Fly   720 AELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMR------ 778
            ::|.|||.||::.:|.|...:.|.::.:||.|:|.|.|||.|...:|.|...|:|:::.      
Zfish   683 SQLIVRVPPRFKVQPQDQDGIYGKSVILNCSADGEPRPTIEWKYSKGAGVPQFQPIALNSGFRVQ 747

  Fly   779 ---NHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDC 840
               |.|||:....:.|.|||:|:.:|::||.:.|::.:||..||.......|..:.:.:.:.:.|
Zfish   748 LLGNGSLLIKHVLEEDAGYYLCKVSNDVGADVSKSMYLNVKIPAMITSYPNNSLATKGEKIEMSC 812

  Fly   841 HAKGDEPITIGW------TQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAE 899
            .|.|::||.:.|      .:.:..|:.:.:|.::........|.|.|.|..:.|.|||.:.|.|.
Zfish   813 KAHGEKPIMVRWEKEVEKEKQSHMINPDMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCHAI 877

  Fly   900 NPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHG 964
            |.||....|:.|.|||.|:.|. :||.||..||:.|.|...|||||.:..|.::.:         
Zfish   878 NSYGEDRGILQLTVQEPPEPPK-VEIREVKERTIALRWTMGFDGNSLITGYDIECK--------- 932

  Fly   965 SLAAAGGDWNGHVINVSLPSTSISRSYD-SDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEA 1028
                          |.:.......|:.| |.....|.:..|.|::|:.|||.|.|.|..|..:..
Zfish   933 --------------NKTETWERARRTRDVSPTLNQATIIELHPSSTYNIRMFAKNHIGDSEPSNE 983

  Fly  1029 IVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTVNCSEEKQNINFISVVNS 1093
            :.:.|.|..|...|.:|.::......:.|||:.|.:...||.:.||.| |..|.........|..
Zfish   984 LTVTTDEADPEGPPQDVTLEAITSQSIKVTWKAPLKHLQNGVIRGYQV-CHREHSTNGSHQFVCI 1047

  Fly  1094 SLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTA 1158
            |:::|    ..|...:|..|:|::.|.|.::|.||.|.||.|:.:..||.|.||..||:.|..||
Zfish  1048 SVEAT----GETESLSLNNLKKFAEYEVVVQASNSAGPGPASSEVRATTMEDVPSRAPEKVVATA 1108

  Fly  1159 LSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKL---EIKRTSNLETY-----LHTL 1215
            .|.:|:.:||..|..:...|::||::|:|.         |.|   |:....|:.|:     |..|
Zfish  1109 ASPESISLSWQTPAREALNGVLQGFRIIYW---------ANLPDGELGEIRNVTTHKAPLELEGL 1164

  Fly  1216 HKASNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIIS 1280
            .|.:||||:|||:|..|||:.|..::.:|.:|||..|..:||||.::..:.:|||.|...||:|.
Zfish  1165 EKYTNYSIQVLAFTRAGDGVRSDQIYIRTKEDVPGPPGGVKAAAASSSVVYVSWLPPLKLNGVIR 1229

  Fly  1281 HYTVYSREAGRKGQAKTHMVRVDE-NGYPVTFESR--SLAENQMYEFWVSASTSVGEGEPTSVIA 1342
            .|||:.        :.|....|.| ...|..|..|  :|:.|:.|..||.|.|:.|.|..:.||.
Zfish  1230 KYTVFC--------SSTSPTVVSEFEVAPDEFLHRVHNLSRNRKYNIWVMAVTAAGRGNSSDVIT 1286

  Fly  1343 QATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRD---RPVTFSPFYEVTNEGN 1404
            .....:|||:|.:|...|.......:||.|.|||:|.|..:||...   .|........:...|:
Zfish  1287 VEPLAKAPAKILTFSGTVTTPWMRDVVLPCRAVGDPPPAIKWLKESGSPAPAVIDGRRSIHGNGS 1351

  Fly  1405 LKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGGAP 1469
            ..|..|:...||.|||.|:|.:|:|||...:....||..|::.|...:..||.|:|...|:||:.
Zfish  1352 FIIKTVKAEDSGYYTCVASNNYGTDEIILNLQVQVPPDQPRLTVTKTTTTSITVTWTPGDNGGSS 1416

  Fly  1470 LQGYTISY-HTAGESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGK 1533
            ::||.:.| ....|.|....:.|...::.:..|.||..|...::|.|.||.|..||.|...|.||
Zfish  1417 IRGYILQYSEDNSEKWGSISISPSERSYRLENLNCGTWYKFTLTAQNAVGPGRISEIIEAKTHGK 1481

  Fly  1534 ASQAPNANELIAT-NATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWT-VVTSDISNAEENREN 1596
            ..|.....||..: |.|.|.|.|..|.:|||.|..|::|:|||....|| ...:.:|.:    .|
Zfish  1482 EPQFSKEQELFTSINGTSVKLNLIGWNDGGCPITSFTLEYRPLESPVWTKAKRTSLSKS----YN 1542

  Fly  1597 LIFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLI-NSTNPT 1660
            |:  |...|.||:|::...|.||...:...|:|.:.||.||||         |:..|: :....|
Zfish  1543 LL--DLQEATWYELQMKVYNSAGLAEKRVKFATLSYDGSTIPP---------LVKTLVKDPVKKT 1596

  Fly  1661 SGDWFATLIVV--VIITVSIITIALTIKHRRTLCGPIAEGYESRTLPGDYKEDHENRRNQQV--- 1720
            |.:....::.:  :::.:.::.:.|.:..||                         ||.|::   
Zfish  1597 SNEGMKMMVTISCILVGMVLLFVLLMVLRRR-------------------------RREQRLKRL 1636

  Fly  1721 ------------YSASPVKTVDKGNES-EMYEISPYATFSVNGGRTGAPAKTPTRAVAAQTPLDY 1772
                        .:..|..|::|..:: .|:...|.|...:....|                   
Zfish  1637 RDAKSLAEMLMSKNTRPSDTMNKQQQTLRMHIDIPRAQLLIEERDT------------------- 1682

  Fly  1773 TMQFKTFGHPEGENLNATAYPLLPSSGFGHV---KSKSSWHKQRYYNTEDESTLSKSMTIVAGSQ 1834
                       .|.::..:..||..:.||..   ||.:..|...|   :..|..:..:..|:..:
Zfish  1683 -----------METVDDRSTVLLTDNDFGETAKQKSATVTHSVHY---QSLSQATGPLVDVSDVR 1733

  Fly  1835 AGHSKKS----NGGRSAKSSAAC-----------------------------SGVVAGS---ESD 1863
            .|.||.|    ...|:||:..|.                             :..||||   |||
Zfish  1734 PGTSKSSLSNPTSRRTAKAGPAARNRYASQWTLNRPHPPVSVHTLSTDWRLGTPRVAGSVDKESD 1798

  Fly  1864 T-SISPSTEFSNMPTYRVPCKSSRSSD---GRA----------------VVDMFRPDSSTE---- 1904
            : |:|||.:.....:..|..:|:.|:.   .||                :.:.|..|:|:|    
Zfish  1799 SYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTA 1863

  Fly  1905 SNND------QGSP----------APERRHNTPRHVLGMGMAMGLGGGG---------------G 1938
            ..||      ..:|          :|.:..:..| |:.|.:......||               .
Zfish  1864 GTNDYTDSLTSSTPSESGICRFTASPPKPQDVCR-VINMAVPKAHRPGGELVHLPPYLRMDFLLN 1927

  Fly  1939 GGVGGGN----------GPAEKRSAGQRSRKHGSAAQQPSNQTLERRKCPGSSNSL---DSEVDA 1990
            .||.|.:          .|.:.||..:.:....:..:.|:::.:::.: .|::::|   ::..|.
Zfish  1928 RGVSGTSREAAMGQACLEPQKTRSLKRPALLEPTPMEVPTSRDVQQWQ-SGTASTLPQREAGTDL 1991

  Fly  1991 ETAASLAASIAAMAGS 2006
            ..||.::.|..::..|
Zfish  1992 AQAAKISTSQESLLDS 2007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 29/79 (37%)
Ig 56..125 CDD:143165 27/71 (38%)
I-set 246..337 CDD:254352 28/94 (30%)
Ig 264..334 CDD:143165 22/69 (32%)
I-set 345..433 CDD:254352 25/89 (28%)
Ig 358..431 CDD:143165 23/74 (31%)
Ig 456..533 CDD:143165 28/76 (37%)
IGc2 553..619 CDD:197706 22/65 (34%)
I-set 634..724 CDD:254352 38/89 (43%)
ig 645..712 CDD:278476 26/66 (39%)
IG_like 734..815 CDD:214653 29/89 (33%)
Ig 745..815 CDD:299845 26/78 (33%)
I-set 820..913 CDD:254352 24/98 (24%)
Ig 838..920 CDD:299845 27/87 (31%)
FN3 917..1033 CDD:238020 31/116 (27%)
FN3 1040..1142 CDD:238020 29/101 (29%)
fn3 1150..1237 CDD:278470 34/94 (36%)
FN3 1263..1345 CDD:238020 27/84 (32%)
Ig 1350..1436 CDD:299845 30/88 (34%)
IG_like 1358..1436 CDD:214653 26/80 (33%)
FN3 1441..1530 CDD:238020 28/89 (31%)
FN3 1542..1620 CDD:238020 29/79 (37%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142 28/98 (29%)
I-set 236..311 CDD:254352 27/84 (32%)
IG_like 321..402 CDD:214653 25/87 (29%)
I-set 408..502 CDD:333254 35/96 (36%)
IGc2 524..579 CDD:197706 19/56 (34%)
Ig 614..679 CDD:319273 27/64 (42%)
Ig_DSCAM 708..787 CDD:143211 26/78 (33%)
Ig 805..898 CDD:325142 27/92 (29%)
FN3 894..988 CDD:238020 31/117 (26%)
FN3 995..1092 CDD:238020 29/101 (29%)
fn3 1100..1186 CDD:306538 34/94 (36%)
fn3 1199..1282 CDD:306538 30/90 (33%)
Ig 1312..1377 CDD:319273 22/64 (34%)
fn3 1405..1471 CDD:306538 20/65 (31%)
FN3 1492..1563 CDD:238020 26/76 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.690

Return to query results.
Submit another query.