DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and PSG4

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_016882486.1 Gene:PSG4 / 5672 HGNCID:9521 Length:426 Species:Homo sapiens


Alignment Length:435 Identity:95/435 - (21%)
Similarity:164/435 - (37%) Gaps:113/435 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   526 GSVQHSARLNVYGPPYVRAI----GPIKAVAGEDI--IVH-CP--FAGYPVEQIRWEKAHQELTT 581
            |.:..::.||.:.||....:    .|.|...|:|:  :|| .|  .|||     .|.|.  ::|.
Human    17 GVLLTASLLNFWNPPTTAQVTIEAQPPKVSEGKDVLLLVHNLPQNLAGY-----IWYKG--QMTY 74

  Fly   582 SNHYELASVADGGQLVIKNVEPGRDQGIY---TCIVRSRAGEEA---------RRD--------- 625
            ..||..:.|.||.:::......||:: :|   :.::::...|:|         |||         
Human    75 LYHYITSYVVDGQRIIYGPAYSGRER-VYSNASLLIQNVTQEDAGSYTLHIIKRRDGTGGVTGHF 138

  Fly   626 ---MQLNVNSPPVIEPFKFPKNLQEGGRAQITC-----AVSSGDMPIYFSWKKDDSSIPSS--LQ 680
               :.|....|.:......|:...|.  ..:||     |.|       :.|..:..|:|.:  ||
Human   139 TFTLHLETPKPSISSSNLNPREAMEA--VILTCDPATPAAS-------YQWWMNGQSLPMTHRLQ 194

  Fly   681 ITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLG--- 742
            :::.....:...|.|.|    :|.|.|...|..: .:.:..:.:.:.|:.. :|..|...|.   
Human   195 LSKTNRTLFIFGVTKYI----AGPYECEIRNPVS-ASRSDPVTLNLLPKLS-KPYITINNLNPRE 253

  Fly   743 --NTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMR------NHSLLLNLATDNDEGYYMCQA 799
              :.::..||.:......|.|..||.      .|:|.|      |..|:|...|.|:.|.|.|:.
Human   254 NKDVLTFTCEPKSKNYTYIWWLNGQS------LPVSPRVKRPIENRILILPNVTRNETGPYQCEI 312

  Fly   800 TNEIGAGLKKTIRINV----NEPA-----RFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQN 855
            .:..|......:.:||    :.|:     .:.:|..|:        .|.|.|:.:......|| .
Human   313 RDRYGGIRSDPVTLNVLYGPDLPSIYPSFTYYRSGENL--------YLSCFAESNPRAQYSWT-I 368

  Fly   856 NGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAEN 900
            ||:..|:..:.||.::.|              :| ||:|.|...|
Human   369 NGKFQLSGQKLSIPQITT--------------KH-SGLYACSVRN 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 1/6 (17%)
IGc2 553..619 CDD:197706 19/73 (26%)
I-set 634..724 CDD:254352 18/96 (19%)
ig 645..712 CDD:278476 16/73 (22%)
IG_like 734..815 CDD:214653 21/91 (23%)
Ig 745..815 CDD:299845 18/75 (24%)
I-set 820..913 CDD:254352 19/81 (23%)
Ig 838..920 CDD:299845 17/63 (27%)
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
PSG4XP_016882486.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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