DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and pigr

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001289179.1 Gene:pigr / 566471 ZFINID:ZDB-GENE-060503-327 Length:335 Species:Danio rerio


Alignment Length:280 Identity:57/280 - (20%)
Similarity:98/280 - (35%) Gaps:72/280 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   736 DTAIMLGNTISINCEAEGYPIPTIT-WFKGQGKGSKDF--------KPLSMRN------------ 779
            |.|::.|.::::.|......|..:. |..|:   .::|        .|.|..|            
Zfish    27 DVAVLEGGSVTVPCHYNPQYISNVKYWCSGR---MREFCSSLARTDDPESAPNGNRKVTIADDPT 88

  Fly   780 -HSLLLNL--ATDNDEGYYMCQATNEIG----AGLKKTIRINVNEPARFEQSARN--ISSRRNDP 835
             |...:|:  .|::|.|:|.|..  |:|    :....::.|:|.:    ..|..|  :|:.....
Zfish    89 QHVFTVNMRNLTEDDSGWYWCGV--ELGGMWVSDSTASLYI
SVVQ----GMSVVNGMVSAEEGKS 147

  Fly   836 VTLDC-HAKGDEPITIGW-----------TQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDR 888
            |::.| ::|........|           |.:.|.....|     ..:..:|.....:|:...:.
Zfish   148 VSVQCLYSKNLRSSEKRWCRSGNWNSCLLTDSEGTFSGKN-----VHIHDDKNSVFTVTLQRLEM 207

  Fly   889 HDSGVYRCIAENPYGRAEQIIFLAVQERPDTP----SHLEIFEVGSRTVKLS--------WRRPF 941
            .|||.|.|.|    |:....:.::|..|..||    |.:.....|:.:|..|        |..|.
Zfish   208 RDSGWYWCGA----GQQNVAVHVSVTRRSPTPVSTASPVHNKTAGNLSVTSSNESYSRPVWESPL 268

  Fly   942 DGNSPVLSYLVQYQALKYLQ 961
            .....||..:....||..||
Zfish   269 VMCGVVLLVMTACVALWKLQ 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653 21/106 (20%)
Ig 745..815 CDD:299845 18/97 (19%)
I-set 820..913 CDD:254352 19/106 (18%)
Ig 838..920 CDD:299845 17/93 (18%)
FN3 917..1033 CDD:238020 14/57 (25%)
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
pigrNP_001289179.1 IG_like 26..127 CDD:214653 20/104 (19%)
Ig_pIgR 28..115 CDD:143193 18/91 (20%)
Ig_pIgR 139..231 CDD:143193 18/100 (18%)
IG_like 140..228 CDD:214653 17/96 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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