DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and sdk2b

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_009305142.1 Gene:sdk2b / 564922 ZFINID:ZDB-GENE-030131-8203 Length:2256 Species:Danio rerio


Alignment Length:2341 Identity:492/2341 - (21%)
Similarity:785/2341 - (33%) Gaps:732/2341 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PCLVLEKALLLGALLLAVLATPLLATSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVT 71
            ||.::...|:|..|..|....|         |.|..||.|..|........:||.|.||.|....
Zfish    31 PCWIVILLLVLLHLASAQDDVP---------PYFKTEPVPSQLHLERNRLVLTCMAEGSWPLEFK 86

  Fly    72 WVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVV 136
            |:..|    |::...       :|.:...:....|:  |...|||...|..|.:|.|..:|..  
Zfish    87 WIHND----TEITRF-------SLEYRYLIPSLDRS--HAGFYRCIVRNRVGALLQRRTEVQV-- 136

  Fly   137 RRQFHVHVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDL 201
                        .|:|                    |:..||                       
Zfish   137 ------------AYMG--------------------SFEEGE----------------------- 146

  Fly   202 YVRSVRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHL 266
                                       |:.|                         |.:|....:
Zfish   147 ---------------------------RTQA-------------------------VSQGEGAVI 159

  Fly   267 PC-NIQGNPFPIFTWYRVSDSAALYPIPSSQR--VILSRTLLLIKNADERDAGKWICQASN-QFG 327
            |. .|:..|.|..||:|....     ||.|.|  :.|..||:::... ..|||::..||.| :.|
Zfish   160 PAPRIRCFPQPQVTWFRDGRK-----IPPSSRIAITLDNTLVILSTV-APDAGRYYVQAVNDKNG 218

  Fly   328 EQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCTT-----------TGSAIDAIDWLHNGKPL 381
            |.:          ...||...|:  |.||.|:....|           :|::...::.:.|.:||
Zfish   219 ENK----------TGQHITLSVE--NVGGPADPIAPTIVIPPRNTSVISGTSEVTMECVANARPL 271

  Fly   382 QANNALTTGRDNIRFLSKSS-----LLVQNVGRRDRGVYQCLVENQRASAQAMAE------LKLG 435
             ...:::..:|.:...|..|     |.|.:....|.|.|:|....:.:|..|::.      |:..
Zfish   272 -IKLSISWKKDGVLVRSGLSDFNRRLTVLSPAVSDSGFYECEAVLRSSSVPAVSAGAYLHVLEPP 335

  Fly   436 DTV--PELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSG 498
            ..|  ||...|...:.|     :.:.|.|.|.|.|...|..|:.||..|.. .|:.:     :||
Zfish   336 QFVKEPEKHITAEMEKV-----VDIPCQARGVPQPDIVWYKDAVPISPVKT-PRYRV-----LSG 389

  Fly   499 DVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYG-PPYVRAIGPIKA--VAGEDIIVHC 560
               ..|.::.:.|||.|:::|.|.|..|.||.:..|.|.. .|.:.| ||..:  :.|..:|:||
Zfish   390 ---GSLQVNGLLPDDTGMFQCFARNQAGEVQTNTYLAVTSIAPNITA-GPSDSTVIDGMSVILHC 450

  Fly   561 PFAGYPVEQIRWEKAHQELTTSNHYELA--SVADGGQLVIKNVEPGR--DQGIYTCIV-RSRAGE 620
            ..:|.|...|.|:|..:.| .|...:|.  ::.:.|.|:|   .|..  |.|.|||:. .||..:
Zfish   451 ETSGAPRPAITWQKGERVL-ASGSVQLPRFTLLESGSLLI---SPSHISDAGTYTCMASNSRGID 511

  Fly   621 EARRDM----QLNVNSPPVIEPFKFPKNLQEGGRAQITCAVS-SGDMPIYFSWKKDDSSIPSSLQ 680
            ||..|:    :..:.:||.      .:::.:|.:|.:||.|: ...:.:.|.|:||...|.:. .
Zfish   512 EASADLVVWARTRITNPPQ------DQSVIKGTKATMTCGVTHDPSVSVRFVWEKDGQVIVTQ-G 569

  Fly   681 ITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNT- 744
            :...:.:....|......:...|.|||..::.....:..|.|:||..|   :.|.:.:.:|.:| 
Zfish   570 LPRLRLDVNGTLHISQTWSGDIGTYTCRVTSVGGNDSRNAHLRVRQLP---HAPENPSAVLSSTE 631

  Fly   745 -ISINCEAEGYPIPTITW---FKGQGKGSKDFKPLSMRNHSLLLNLATDNDEG------------ 793
             .:||          :||   |.|.....:....:|..|....:.||....|.            
Zfish   632 KRAIN----------LTWAKPFDGNSPLIRYILEVSENNAPWTVLLANIEPESTAVTVNGLIPAR 686

  Fly   794 ---YYMCQATNEIGAG--LKKTIRI------------NVNEPARFEQSA---------------- 825
               :.:| |.|::|.|  .|:|.|:            ||....|..||.                
Zfish   687 SYQFRLC-AVNDVGKGQFSKETDRVSLPEEPPSAPPQNVIASGRTNQSIMIQWQPPPESHQNGIL 750

  Fly   826 ------------------RNISSRRNDPVT--------------------------LDCH----- 841
                              :|||   |..||                          :.||     
Zfish   751 RGYIIRYRLTGLPVDIQYKNIS---NPDVTNLLLEDLIIWTNYEIEVAAYNGAGLGVYCHKVTEW 812

  Fly   842 --------AKGD---EP-----ITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDSQLT-------- 882
                    |.|:   ||     |...||..|.:. :|........:..|.|.:.:.|        
Zfish   813 TLQGVPTIAPGNVKAEPVNSTTIRFTWTAPNPQF-INGINQGYKLLAWEPGKEDETTVVTVRPNF 876

  Fly   883 -----IGH-------SDRHDSGV-YRCIAENPYGRAEQIIFLAVQERPDTP---SHLEIFEVGSR 931
                 :||       |:.:.|.: :....:.|.....::     :...|||   .||...|:...
Zfish   877 QDSVHVGHIGGLKKFSEYYTSVLCFTTPGDGPRSSPRRL-----RTHEDTPGAVGHLSFTEILDT 936

  Fly   932 TVKLSWRRPFDGNSPVLSYLVQYQ----------------ALKY------------LQSHGSLAA 968
            ::|:|||.|.:.|..:..|.:.::                .|:|            ::.....:.
Zfish   937 SLKVSWREPNEKNGVLTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSK 1001

  Fly   969 AGGDWNGHVINVSLP------------------------------STSIS--------------- 988
            ..|..:...|:..:|                              .||||               
Zfish  1002 GQGQLSSSTISSGVPPELPGPPTNLAISNIGPRTVTLQFKPGYDGKTSISRWQVEAQVGVIGENE 1066

  Fly   989 -------RSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYTE-AIVLKTQEEAPTEAPSNV 1045
                   |:.:.|.| |..|:||.|.|.:..||:.:|.:..|..:: :..::|.:..|..||:||
Zfish  1067 DWVMVHQRANEPDAR-SLEVSGLNPYTFYRFRMRQVNIVGTSPPSQPSRKIQTLQAPPDMAPANV 1130

  Fly  1046 QVQTGGESELIVTWQIPPRESWNG--ELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKA 1108
            .::|..|:.|.:.|...|...:||  :.:||.|..|.        :...|.....:::.....:.
Zfish  1131 TLRTASETSLWLRWVPLPEWEYNGNPDSVGYRVQYSR--------TGAPSKALLHVIADRLEREF 1187

  Fly  1109 TLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPL 1173
            |:..|.:::.|.|.::|:|..|:||||..:.|.|.|.||...|.||:..|.:|.|:.:.|.|.|.
Zfish  1188 TIEDLEEWTEYEVRVQAINGIGAGPWSQPVRGRTRESVPSCGPTNVSAFATTSSSILVRWFEVPE 1252

  Fly  1174 QFHGGIIQGYKILYRPIVHQIDFPAKL-EIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGLAS 1237
            ....|:|.|||:.|:.  ...|.|.:. .::..::....|..|.|...|.|:|||:|..|||..|
Zfish  1253 PDRNGLILGYKVAYKE--KDSDSPLQFWTVEGNASHSVQLTGLGKYVLYEIQVLAFTRIGDGRPS 1315

  Fly  1238 HP-LFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTV-YSREAGRKGQAKTHMV 1300
            .| :..:|.||||..|..|....:...|:.:.|..|...||||..|.: |...:.....|...::
Zfish  1316 TPSILERTLDDVPGPPVVILFPEVRTTSVRLIWQPPSQPNGIILAYQITYRLNSTNSNTATFDVL 1380

  Fly  1301 RVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVG 1365
            ......|.||    .|....:|.|.:.|.|..|.||....:...|..||..:..|...|.::.|.
Zfish  1381 NSSARQYTVT----GLRPESVYVFRIRAQTRKGWGEAAEALVVTTEKRARPQPTSRPTVPQENVQ 1441

  Fly  1366 TGLVLECLAVGN--------------PTPRARWLTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSG 1416
            ...||.....|:              ..|...|......|:.       ...:..:.|::...|.
Zfish  1442 ARSVLLSWEPGSDGLSPIRYYTVQVRELPEKNWTVHSASVSH-------ESSSYIVDRLKPFTSY 1499

  Fly  1417 NYTCTANNLFGSDEIQYQVIAM-----KPPSAPQII-VQYASADSIRVSWDAPDDG--GAPLQGY 1473
            .:...|.|..|..:...:..|:     .|..:|.|: |...:..|:.:.|..|.:.  ...|.|:
Zfish  1500 QFRVKATNDIGDSDYSQESEAITTLQDAPDESPTILTVTPHTTTSVLICWQPPPEEKINGILLGF 1564

  Fly  1474 TISY-------------HT---AGESWSITELL----------PENNAFTISGLKCGNQYIIKMS 1512
            .|.|             ||   |..||:  ||.          |....:.:..|....:|.|:||
Zfish  1565 RIRYRELLYDRLRSFSVHTISSASASWA--ELTSPYSMRNLSEPSLTQYELDNLLKHKRYEIRMS 1627

  Fly  1513 AHNMVGSGVASEEINVWTKGKASQAPNANELIATNATCVNLKLSSW-------QNG---GCSIHH 1567
            .:|.||.|..|....|:.......||..| :|..:||.....: :|       |||   |..|..
Zfish  1628 VYNAVGEGPTSSPQEVFVGEAVPTAPPQN-VIIQSATATQFDV-TWDPPPLETQNGDIQGYKIFF 1690

  Fly  1568 FSIEHRPLGDIRWTVVTSDISNAEENRENLIFCDFLPA-----------KWYQLRISATNDAG-- 1619
            :..:.:               |..|....|    |||.           ..|.:.::|.|.||  
Zfish  1691 WEYQRK---------------NETEKLRTL----FLPEGGVKLKNLTGYTTYMISVAAFNAAGDG 1736

  Fly  1620 ---------------KTTEHYHFS--TTNIDGITIPPPSVFPSENDLMN---------------- 1651
                           ......|||  ||....::...| |||  |.::.                
Zfish  1737 PRSPPTRGRTQQAAPSAPSFIHFSELTTTSVNVSWGEP-VFP--NGIIEGYRLIYEPCMPVDESS 1798

  Fly  1652 ----NLINSTNPTSGDWFATLIVVVIITVSI----------------ITIALTIKHRRTLCGPIA 1696
                :.::|.:|..        |..|:||.:                :|....|:.:....||..
Zfish  1799 VACVDCLHSPSPPG--------VSKIVTVDVKGNAPLWLKIKDLADGVTYNFRIRAKTFTYGPEV 1855

  Fly  1697 EGYESRTLPGDYKEDHENRRNQQVYSASPVKTVDKGNESEMYEISPYATFSVNGGRTGAPAKTP- 1760
            |. ...|.||:               .:|      |...|.: ||.|.:........|.|.:.| 
Zfish  1856 EA-NITTGPGE---------------GAP------GPPGEPF-ISRYGSALTIHWANGDPGRAPI 1897

  Fly  1761 TRAVAAQTPLD-----------------YTM-----------QFKTFGHPEGENLNATAY--PLL 1795
            ||.|....|.|                 ||.           .|:..|      :|...|  |..
Zfish  1898 TRYVIEARPSDEGLWDILIKDIPKEVTSYTFNMDILKQGVSYDFRVIG------VNDYGYGSPSQ 1956

  Fly  1796 PSSGFGHVKSKSSWHKQRYYNTEDEST------LSKSMTIVAGSQAGHSKKSNGGRSAKSSAACS 1854
            ||.... .:..:.::::.::.......      |...:.|:.|....::|||:...::..:|...
Zfish  1957 PSPSIS-AQKVAPFYEEWWFLVVVALVGLIFILLLVFILIIRGQSKKYAKKSDSSNNSNCNALTH 2020

  Fly  1855 GVVAGSESDTSISPSTEFSNMPTYRVPCKSS-------------RSSDGRAVVDMFRPDSSTESN 1906
            |.:.  ..|.|..|:.|.:|.   |:..|:|             |.|.|.  ::....|.||:.|
Zfish  2021 GEMV--SLDESRFPALELNNR---RLSVKNSFCRKNGVYTRSPPRPSPGS--LNYSDEDVSTKYN 2078

  Fly  1907 N 1907
            :
Zfish  2079 D 2079

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 19/76 (25%)
Ig 56..125 CDD:143165 17/68 (25%)
I-set 246..337 CDD:254352 24/94 (26%)
Ig 264..334 CDD:143165 22/73 (30%)
I-set 345..433 CDD:254352 22/109 (20%)
Ig 358..431 CDD:143165 17/88 (19%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 23/70 (33%)
I-set 634..724 CDD:254352 18/90 (20%)
ig 645..712 CDD:278476 15/67 (22%)
IG_like 734..815 CDD:214653 22/114 (19%)
Ig 745..815 CDD:299845 19/101 (19%)
I-set 820..913 CDD:254352 28/194 (14%)
Ig 838..920 CDD:299845 20/123 (16%)
FN3 917..1033 CDD:238020 35/199 (18%)
FN3 1040..1142 CDD:238020 28/103 (27%)
fn3 1150..1237 CDD:278470 29/87 (33%)
FN3 1263..1345 CDD:238020 21/82 (26%)
Ig 1350..1436 CDD:299845 14/99 (14%)
IG_like 1358..1436 CDD:214653 13/91 (14%)
FN3 1441..1530 CDD:238020 29/117 (25%)
FN3 1542..1620 CDD:238020 20/115 (17%)
sdk2bXP_009305142.1 IGc2 69..125 CDD:197706 16/68 (24%)
IG_like 70..136 CDD:214653 20/78 (26%)
I-set 147..230 CDD:254352 28/123 (23%)
Ig 156..230 CDD:299845 24/89 (27%)
I-set 242..331 CDD:254352 16/89 (18%)
IGc2 260..313 CDD:197706 12/53 (23%)
I-set 335..424 CDD:254352 30/102 (29%)
Ig 357..424 CDD:299845 25/75 (33%)
I-set 429..519 CDD:254352 30/94 (32%)
Ig 443..519 CDD:299845 26/79 (33%)
I-set 524..613 CDD:254352 19/95 (20%)
Ig 529..613 CDD:299845 18/90 (20%)
FN3 617..707 CDD:238020 21/103 (20%)
fn3 720..803 CDD:278470 11/85 (13%)
FN3 821..917 CDD:238020 17/101 (17%)
FN3 922..1010 CDD:238020 14/87 (16%)
FN3 1020..1114 CDD:238020 17/94 (18%)
fn3 1126..1214 CDD:278470 25/95 (26%)
FN3 1230..1318 CDD:238020 30/89 (34%)
FN3 1328..1421 CDD:238020 24/96 (25%)
FN3 1427..1522 CDD:238020 15/101 (15%)
FN3 1532..1643 CDD:238020 28/112 (25%)
FN3 1653..1746 CDD:238020 22/113 (19%)
FN3 1751..1848 CDD:238020 18/107 (17%)
fn3 1875..1952 CDD:278470 16/83 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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