DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and sdk2a

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_021327143.1 Gene:sdk2a / 561852 ZFINID:ZDB-GENE-091008-1 Length:2224 Species:Danio rerio


Alignment Length:2466 Identity:527/2466 - (21%)
Similarity:846/2466 - (34%) Gaps:778/2466 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSLATQ--------VPGLRKISGNGT 94
            |.|.:||....:........:||.|.||.|....| |.:|:..|:        :|.|.:      
Zfish    52 PYFKMEPVATQIHLEGNRVVLTCMAEGSWPLEFKW-LYNGTELTRFSLEYRYVIPSLDR------ 109

  Fly    95 LHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVENTEVY-LGNSALIK 158
                          .|...|||...|..|.::.|:.|:.......| |..|.::|. .|.:|||:
Zfish   110 --------------SHAGFYRCIVRNRVGALMQRSSQLQVAYMEGF-VEAERSQVVSQGEAALIQ 159

  Fly   159 -CAIPEYVRPYVRVASWHR-GEEILLPDLSDVA----GRYVVLAA----SGDLYVRSVRSEDGLM 213
             ..|..:.||.:   :|.| |.:|  |..|.:|    ...|:|:.    :|..|.::|       
Zfish   160 PPKIHSFPRPGI---TWFRDGRKI--PPSSRIAITLDNTLVILSTVAPDAGRYYAQAV------- 212

  Fly   214 KFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHLPCNIQGNPFPIF 278
                   |..|||.:.|..|:|.|:                              |:.|...|| 
Zfish   213 -------NDKNGENKTSQPVILTVE------------------------------NVGGPADPI- 239

  Fly   279 TWYRVSDSAALYPIPSSQRV-ILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVS 342
                 :.|..:.|..:|..| ....||..:.||                   |..|:||      
Zfish   240 -----APSIIIPPKNTSVMVGTFEVTLECVANA-------------------RPLIKLS------ 274

  Fly   343 VHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNV 407
                                         |.|..||  :..|..|   ||..|.|:.|..||.  
Zfish   275 -----------------------------ITWRKNG--VLVNRGL---RDFGRRLTISGPLVS-- 303

  Fly   408 GRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIY-TFIEQ-----NVRPGPLISLKCSASGSP 466
               |.|.|||....:.:||.:::   .|..:..|.: .|:::     ......::.:.|.|.|.|
Zfish   304 ---DSGYYQCEASLRSSSAPSVS---AGAYLHVLEHPQFVKEPDRHITAEMEKVVDIPCQARGVP 362

  Fly   467 PPQFAWLLDSQPIMDVSL-HHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQH 530
            .|...|..|:.||..|.. .:|..:|          ..|.|:.:.|||.|:::|.|.|..|.:|.
Zfish   363 QPDIVWYKDAVPISPVKTPRYRVLVG----------GSLQINGLLPDDTGMFQCFARNLAGEIQT 417

  Fly   531 SARLNVYG-PPYVRAIGPIKA--VAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELA--SV 590
            :..|.|.. .|.:.| ||..:  :.|..||:||..:|.|...|.|:||.:.| .|...:|.  ::
Zfish   418 NTYLAVTSIAPNITA-GPSDSAVIDGMSIILHCETSGAPRPAITWQKAERVL-ASGSVQLPRFTL 480

  Fly   591 ADGGQLVIKNVEPGR--DQGIYTCIV-RSRAGEEARRDM----QLNVNSPPVIEPFKFPKNLQEG 648
            .:.|.|:|   .|..  |.|.|||:. .||..:||..|:    :..:.:||.      .:::.:|
Zfish   481 LESGSLLI---SPSHLLDAGSYTCMASNSRGIDEASADLVVWARTRITNPPQ------DQSVIKG 536

  Fly   649 GRAQITCAVS-SGDMPIYFSWKK-----DDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTC 707
            .:|.:||.|: ...:.:...|:|     |..|.| .|::........|.....||     |.|||
Zfish   537 TKAAMTCGVTHDPSVTVRHIWEKGGAVIDVKSSP-RLRLDSNGTLHISQTWSGDI-----GTYTC 595

  Fly   708 YASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITW---FKGQGKGS 769
            ..::........|.|:||..|. ..|.:...:.:....:||          :||   |.|.....
Zfish   596 RVTSVGGNDTRNAHLRVRQLPH-APENLIATLSISERRTIN----------LTWAQAFDGNSPLI 649

  Fly   770 KDFKPLSMRNHSLLLNLATDNDEG---------------YYMCQATNEIGAG--LKKTIRINVNE 817
            :....:|..|....:.||....|.               :.:| |.|::|.|  .::|.|:::.|
Zfish   650 RYILEVSENNAPWTVLLANIEPESISVIVGGLIPARSYQFRLC-AVNDVGKGQFSRETARVSLPE 713

  Fly   818 ------PARFEQSAR-NIS----------SRRNDP------------VTLDCHAKG----DE--- 846
                  |.....|.| |.|          |.:|.|            :.:||..|.    |:   
Zfish   714 EPPSAPPQTVIASGRTNQSIMIQWQPPPESHQNGPLQGYIIRYCLSGLPVDCQMKNITNPDQTNL 778

  Fly   847 ---------------------------PITIGWTQNN------GRIDLN-------NFRFSIAEM 871
                                       |....||...      |.:...       .|.:|....
Zfish   779 LLEDLIIWTNYEIEVAAYNGAGQGVYSPKVTEWTLQGVPTVPPGNVQAEAVNSTTVRFTWSAPSP 843

  Fly   872 KTEKGVDSQLTI-----GHSD-----------------RHDSGV------YRCI------AENPY 902
            :...|::....:     ||.:                 .:.||:      :.|:      .:.|.
Zfish   844 QFINGINQGYKLLAWEPGHEEDVTLVTVRPNFQDSVHVGYISGLKKFTEYFTCVLCFTTPGDGPR 908

  Fly   903 GRAEQIIFLAVQERPDTP---SHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALK------ 958
            ..|::|     :...|||   .||...|:...::|:||:.|.:.|..:..|.:.::...      
Zfish   909 STAQRI-----RTHEDTPGPVGHLSFTEILDTSLKVSWKDPPEKNGILTGYRISWEEFNRTNTRV 968

  Fly   959 --YL---------------------------QSHGSLAAA-----------GGDWNGHVINVSLP 983
              ||                           :..|.|:::           |...|..:.|:|..
Zfish   969 THYLPNMTQEYRVTGLTALTTYTIQVAGMTNKGQGQLSSSTISSGVPPEMPGPPTNIAISNISPR 1033

  Fly   984 S------------TSISR----------------------SYDSDLRESAIVAGLTPATTFLIRM 1014
            |            |||||                      |.:.|.| |..|.||.|.|.:..||
Zfish  1034 SVTLQFKPGYDGKTSISRWLIEAQIGVIGENEEWVMVHQLSNEPDAR-SLEVQGLNPYTYYRFRM 1097

  Fly  1015 QAINEIERSAYTE-AIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNG--ELIGYTV 1076
            :.:|.:..|..:: :..::|.:..|..||:|:.::|..|:.|.:.|...|...:||  ||:||.|
Zfish  1098 RQVNIVGTSPPSQPSRKIQTLQAPPDIAPANITLRTASETSLWLRWVPLPEWEYNGNPELVGYRV 1162

  Fly  1077 NCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGT 1141
            ..|.....:.|:        |.|:......:.|:..|.:::.|.|.::|.|..|.||||..:.|.
Zfish  1163 QYSRLGSKVGFL--------SHIIPDRQEREFTIEDLEEWTEYEVKVQAFNGIGPGPWSQPVHGR 1219

  Fly  1142 TAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKLEIKRTS 1206
            |.|.||.:.|.||:..|.:|.|:.:.|.:.|.....|:|.|||::|:    :.|..:.|......
Zfish  1220 TRESVPSSGPANVSAFATTSSSILVRWGDVPETDRNGLILGYKVVYK----EKDAESVLHFWTVE 1280

  Fly  1207 NLETY---LHTLHKASNYSIRVLAYTATGDGL-ASHPLFCQTDDDVPDAPAAIKAAALTADSILI 1267
            ...||   |..|.|...|.|:||::|..|||: :|.|:|.:|.||||..|..|....:...|:.:
Zfish  1281 GNTTYSVQLTGLGKYVLYEIQVLSFTRIGDGMPSSPPIFERTLDDVPGPPVGILFPEVRTSSVRL 1345

  Fly  1268 SWLTPKNRNGIISHYTV-YSREAGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTS 1331
            .|..|...||||..|.: :.|.:.....|...::......|..|    .|....:|.|.::|.|.
Zfish  1346 IWQPPAQPNGIILAYQIAFRRNSSSITSANVDVLNPSARQYTAT----GLKPESVYVFRLTAQTR 1406

  Fly  1332 VGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGN--------------PTPRA 1382
            .|.||....:...|..||..:..|...|.::.|....||.....|:              ..|.:
Zfish  1407 KGWGEAAEALVVTTEKRARPQPTSRPVVPQEEVQARSVLLSWEPGSDGLSPIRYYTIQYRELPDS 1471

  Fly  1383 RWLTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAM-----KPPS 1442
            .|......|.    :|.|   :..|.|::...|..:...|.|..|..|...:..|:     .|..
Zfish  1472 NWTVHSASVN----HEAT---SYVIDRLKPFTSYQFRVKATNDIGDSEYSEESEAITTLQDAPDK 1529

  Fly  1443 APQII-VQYASADSIRVSWDAP--DDGGAPLQGYTISY----------------HTAGESWSITE 1488
            ||.|: |...:..|:.|.|..|  ::....|.|:.:.|                ::...:|:  |
Zfish  1530 APTILSVTPHTTTSVLVRWKPPPEEEINGILLGFRVRYRELRYDRLRSFTVRTVNSPAGNWA--E 1592

  Fly  1489 L--------LPENN--AFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKA--SQAPNAN 1541
            |        |.|::  .:.:..|....:|.|::|.:|.||.|..|....|:. |:|  :.||...
Zfish  1593 LTAPYSVRNLSESSLTQYELDNLNKHKRYEIRLSVYNAVGEGPTSSPQEVFV-GEAVPTAAPQNV 1656

  Fly  1542 ELIATNATCVNLKLSSW-------QNG---GCSIHHFSIEHRPLGDIRWTVVTSDISNAEENREN 1596
            .:.::.||.:::   :|       |||   |..|:::..:               :.|..|....
Zfish  1657 AIQSSTATQLDV---TWDPPPVEAQNGDIQGYKIYYWEFQ---------------LQNETERLRT 1703

  Fly  1597 LIFCDFLPA-----------KWYQLRISATNDAG-----------------KTTEHYHFS---TT 1630
            |    |||.           ..|.:.:||.|.||                 ......|||   ||
Zfish  1704 L----FLPELSVKLKNLTGYTTYMISVSAFNAAGDGPRSLPTRGRTQQAAPSAPNFIHFSELTTT 1764

  Fly  1631 NID---GITIPPPSVFPSENDLMN--NLINSTNP-TSGDWFATLIVVVIITVSI----------- 1678
            :::   |....|..:......:..  ..::.::| |||       |..|:||.:           
Zfish  1765 SVNMSWGEPKQPNGIVEGYRVVYEPCTPVDDSSPHTSG-------VSKIVTVDVKGSAPLWMKIK 1822

  Fly  1679 -----ITIALTIKHRRTLCGPIAEGYESRTLPGDYKEDHENRRNQQVYSASPVKTVDKGNESEMY 1738
                 :|....|:.:....||..|. ...|.||:               .:|      |...|.:
Zfish  1823 DLADGVTYNFRIRAKTLTYGPEIEA-NITTGPGE---------------GAP------GPPGEPF 1865

  Fly  1739 EISPYATFSVNGGRTGAPAKTP-TRAVAAQTPLD-----------------YTMQFKTFGHPEGE 1785
             ||.|.:........|.|.:.| ||.|....|.|                 ||:...|.  .||.
Zfish  1866 -ISRYGSALTLHWSNGDPGRAPITRYVIEARPSDEGLWDILIKDIPKEVTSYTLNLDTL--REGV 1927

  Fly  1786 N-------LNATAY--PLLPSSGFGHVKSKSSWHKQRYYNTEDEST------LSKSMTIVAGSQA 1835
            .       :|...|  |..||.... .:..|.::::.::.......      |...:.|:.|...
Zfish  1928 TYDFRVIAVNDYGYGSPSAPSPSIS-AQKVSPFYEEWWFLVVIALVGLIFILLLIFILIIRGQSK 1991

  Fly  1836 GHSKKSNGG-------------------------------RSAKSSAAC--------------SG 1855
            .::||::.|                               |.:..::.|              .|
Zfish  1992 KYTKKTDSGAHSNCTSLPLSHGEMVRLDEGRFPALELNNRRLSVKNSFCRKNGIYTRSPPRPSPG 2056

  Fly  1856 VVAGSESDTSISPSTEFSNMPTYRVPCKSSRSSDGRAVVDMFRPDSSTESNNDQGSPAPERRHNT 1920
            .:..|:.|.||    :::::    ||.:||..::..:.|.    ||....:..:..|..::.|:.
Zfish  2057 SLHYSDEDVSI----KYNDL----VPAESSSLTEKPSEVS----DSQASDSEYELDPNRQKTHSF 2109

  Fly  1921 PRHVLG--------MGMAMGLGGGGGGGVGGGNGPAEKRSAGQRSR-------------KHGSAA 1964
            ..|.:.        .....|:......|....:..||     |.||             .|.:.:
Zfish  2110 VNHYISDPTYYNSWRRQQKGVSRPPAYGYAQPDTVAE-----QESRPHPPPLPPLPPLLPHSNPS 2169

  Fly  1965 QQPSNQ-TLERRKCPGSSNSLDSEVDAETAA--SLAASIAAMAGSGAGADLSGGFRPPAGF 2022
            .||..| ||.|.|  ||.....|.:.:|..:  :|....:::..||.        .|..||
Zfish  2170 PQPQPQATLFRPK--GSRTPTPSLLSSENHSQHTLYRPPSSLGSSGQ--------VPATGF 2220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 20/84 (24%)
Ig 56..125 CDD:143165 18/76 (24%)
I-set 246..337 CDD:254352 15/91 (16%)
Ig 264..334 CDD:143165 13/70 (19%)
I-set 345..433 CDD:254352 20/87 (23%)
Ig 358..431 CDD:143165 20/72 (28%)
Ig 456..533 CDD:143165 23/77 (30%)
IGc2 553..619 CDD:197706 25/70 (36%)
I-set 634..724 CDD:254352 21/95 (22%)
ig 645..712 CDD:278476 18/72 (25%)
IG_like 734..815 CDD:214653 18/100 (18%)
Ig 745..815 CDD:299845 18/89 (20%)
I-set 820..913 CDD:254352 26/196 (13%)
Ig 838..920 CDD:299845 20/162 (12%)
FN3 917..1033 CDD:238020 39/199 (20%)
FN3 1040..1142 CDD:238020 31/103 (30%)
fn3 1150..1237 CDD:278470 29/90 (32%)
FN3 1263..1345 CDD:238020 20/82 (24%)
Ig 1350..1436 CDD:299845 18/99 (18%)
IG_like 1358..1436 CDD:214653 17/91 (19%)
FN3 1441..1530 CDD:238020 26/117 (22%)
FN3 1542..1620 CDD:238020 20/115 (17%)
sdk2aXP_021327143.1 IGc2 66..124 CDD:197706 17/78 (22%)
Ig 157..213 CDD:325142 17/74 (23%)
IGc2 259..313 CDD:197706 26/117 (22%)
Ig 352..420 CDD:319273 23/77 (30%)
Ig 442..518 CDD:325142 28/79 (35%)
I-set 523..612 CDD:333254 22/100 (22%)
FN3 616..706 CDD:238020 18/101 (18%)
fn3 719..805 CDD:306538 12/85 (14%)
FN3 820..916 CDD:238020 12/100 (12%)
FN3 921..1009 CDD:238020 14/87 (16%)
FN3 1019..1113 CDD:238020 23/94 (24%)
FN3 1125..1220 CDD:238020 31/102 (30%)
fn3 1229..1314 CDD:306538 29/88 (33%)
FN3 1327..1420 CDD:238020 23/96 (24%)
FN3 1437..1521 CDD:238020 17/90 (19%)
FN3 1530..1642 CDD:238020 25/113 (22%)
FN3 1652..1745 CDD:238020 22/114 (19%)
FN3 1750..1838 CDD:238020 17/94 (18%)
FN3 1871..1942 CDD:238020 14/72 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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