DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and sdk1a

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio


Alignment Length:2326 Identity:513/2326 - (22%)
Similarity:810/2326 - (34%) Gaps:646/2326 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 TSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLH 96
            |.|...|.|..||.|..:........:||.|.||.|....|:|.:..:....|           .
Zfish   119 TQGDVAPYFKTEPGPPEIHLEGNRLVMTCLAEGSWPLEFKWMLNNTDITAFSP-----------E 172

  Fly    97 FPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVENTEVYLGNSALIKC-A 160
            :...::...|:::  ..|:|...|..|.:|.:..::.......|..:.:...|..|.:|::.. |
Zfish   173 YKYTISSLQRSNM--GVYQCVVRNRMGALLQKKAEIQVAYMGDFIDNDQRKTVTQGRAAILNSPA 235

  Fly   161 IPEYVRPYVRVASWHRGEEILLPD---LSDVAGRYVVL--AAS--GDLYVRSVRSEDGLMKFSCL 218
            :..:.||.|   :|.|....::|.   ...:..:.|||  |||  |..||::|            
Zfish   236 VSCFPRPQV---TWFRDGYKIIPSNRIAITLENQLVVLGTAASDAGRYYVQAV------------ 285

  Fly   219 VTNTLNGERQRSDAVMLQVKELSK------NLAPRTTQKPVMEI-----HVERG-NDVHLPCNIQ 271
              |..|||.:.|.::.|.|....|      :.||.....||:.|     .|..| ::..|.|...
Zfish   286 --NEKNGENKTSPSIYLNVAANKKYRGSHDSEAPADPVAPVIVIPPRNTTVVAGISEATLECVAN 348

  Fly   272 GNPFP--IFTWYR----VSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQA-----SNQ 325
            ..|..  ...|.|    |:.....:          ||.|.:| |....|.|.::|:|     |.:
Zfish   349 ARPVEKLSLVWRRNGVEVASGVGSF----------SRRLTII-NPTSTDVGMYVCEALLLDSSVK 402

  Fly   326 FGEQRIEIRLSVNSYVSVHILPQVQIVNS-GGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTT 389
            ..|.|..:.::...|.:..  |:.:::.. ..:.:..|...|..:..::|..:..||...|    
Zfish   403 PAEARAFLSITEAPYFTAE--PRRKMMGEVEKSVDIQCQARGVPMPKLEWYKDAVPLSKLN---- 461

  Fly   390 GRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGP 454
             ....:.:|...|.|:.:...|.|::||...|....||....|.:....|......::..|..|.
Zfish   462 -NPRYKIISSMGLQVRKLQPSDAGIFQCFARNSAGEAQVHTYLDVTSMAPAFTAPPLDITVTDGA 525

  Fly   455 LISLKCSASGSPPPQFAWLLDSQPIMDVSLH-HRFAIGQFVDMSGDVISHLNISHVRPDDGGLYK 518
            :.:..|..||:|.|...|..|:|.:...|:. .||.:   ::..|     |.|..|...|.|.|.
Zfish   526 VAAFTCRVSGAPKPAIVWRRDTQILASGSVQIPRFTL---LESGG-----LQIQPVVLQDTGNYT 582

  Fly   519 CVASNSMGSVQHSARLNVY------GPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIR--WEKA 575
            |.|:||.|::..||.|.|:      .||..|     :.:.|...|:.|.....|...:|  |:| 
Zfish   583 CYAANSEGAINASASLTVWSRTSISSPPTDR-----RVIKGTTAILECGATHDPRVGVRYVWKK- 641

  Fly   576 HQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFK 640
            .:||.:.:.....|:.: |.|.|.....| |.|.|||.|.|.||.|: ::.:|.     |||...
Zfish   642 DEELVSHSRGGRISLQE-GSLHISQTWSG-DIGNYTCDVISEAGNES-KEARLE-----VIELPH 698

  Fly   641 FPKNLQEGGRAQITCAVSSGDMPIYFSWKKD-DSSIPSSLQITEKKEEFYSLLVF---------- 694
            .|:|||....|..:.:|.       .||.:. |.:.|....:.|..|......|:          
Zfish   699 SPRNLQASLNANDSRSVD-------LSWMRPFDGNSPLLHYVVELSENNSPWRVYLSDVDPSGTG 756

  Fly   695 ---KDISARHSGKYTCYASNAAAKVNYTAE---LQVRVAP--------------------RWR-- 731
               |.::...|.::...|.|...:..|:.|   |.:|..|                    :|:  
Zfish   757 AMVKGLTPARSYQFRVCAVNQVGRGQYSTETNRLMLREEPPSAPPKNIVASGRTNQSIMVQWQPP 821

  Fly   732 YEPMDTAIMLGNTI--------------SINCEAEGYPIPT--ITW---------FKGQGKG--S 769
            .||....::.|..:              :|:.....|.:.|  |.|         :.|.|.|  |
Zfish   822 PEPQLNGVLRGYVLRYRLAGLPGEYQQKNISSPEINYCLITELIIWTQYEIQVAAYTGAGLGVFS 886

  Fly   770 KDFKPLSMRN---------HSLLLNLATDN--------------DEGYYMC-------------- 797
            :.....:::.         .:..:|..|..              ::||.:.              
Zfish   887 QPVTEYTLQGVPTAPPQGVEAKAVNSTTIEFSWNPPPQQFINGINQGYKLMAWPERSPEEVIVVT 951

  Fly   798 -----QATNEIG--AGLKK------------TIRINVNEPARFEQSARNIS---SRRNDPVTLDC 840
                 ..|..:|  :||:|            |.......|.:..|:..:|.   .|.:....||.
Zfish   952 ITPDYHGTRHLGYISGLRKFSWYLTSVLCFTTPGNGPRSPPKLVQTFEDIPGPVGRLSFTEILDT 1016

  Fly   841 HAK--GDEPI---------TIGW-TQNN-------------------GRIDLNNFRFSIAEMKTE 874
            ..|  .:||:         .:.| .|.|                   |...|..:...:|.| ||
Zfish  1017 SLKVSWEEPVDKNGIITGYLVSWEVQGNNQSRVARNLANTTLDYKVTGLTSLTTYTLEVAAM-TE 1080

  Fly   875 KGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRR 939
            .||.:..    |....|||                   ..|.|..||:|.|.::.||:..|.:|.
Zfish  1081 AGVGTVT----SSTISSGV-------------------PPELPGPPSNLVISKISSRSATLKFRA 1122

  Fly   940 PFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESA---IV 1001
            ..||.:.:..::|:          |.:.:.|.|....|:            |:.:....|   .|
Zfish  1123 GDDGKTAISKWIVE----------GQVGSIGEDEEWKVL------------YEKENDPEAQMLEV 1165

  Fly  1002 AGLTPATTFLIRMQAINEIERSAYT-EAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRE 1065
            ..|||.|.:..||:.:|.:..||.: .:.|::|.:..|..|||:|.|:|..|:.|.:.|...|..
Zfish  1166 PNLTPFTHYRFRMRQVNIVGPSAVSVPSRVIQTLQAPPDVAPSSVTVRTASETSLWLRWVPLPES 1230

  Fly  1066 SWNG--ELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTK---------ATLRGLRKYSRY 1119
            .:||  |.:||.|.            |:.:.|:     |.|:|:         .||.||.:::.|
Zfish  1231 EYNGNPESVGYRVR------------VMRADLR-----GEASTRLLNDRLEREITLEGLEEWTEY 1278

  Fly  1120 AVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYK 1184
            .:.|:|.||.|.||||.::.|.|.|.||..||:||...|:||..:.::|...|.....|.|.|||
Zfish  1279 QLQIQAFNSIGPGPWSESVKGRTRESVPSGAPENVTAEAMSSSRILVTWGPVPEHEQNGNILGYK 1343

  Fly  1185 ILYRPIVHQIDFPAKLEIKRTSNL--ETYLHTLHKASNYSIRVLAYTATGDG-LASHPLFCQTDD 1246
            :|::.  ...|..|::.:.: .||  ...|..|.|...|.|:|||:|..||| |::.|:..:|.|
Zfish  1344 VLFKE--KDSDSEAQVNVVK-GNLTQSVLLRNLRKYVQYEIQVLAFTRIGDGQLSNPPVLERTKD 1405

  Fly  1247 DVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTV-YSREAGRKGQAKTHMVRVDENGYPVT 1310
            |||..|..:....:....:.:.|..|.:.||||..|.| |..::|...|..|..|..|..    .
Zfish  1406 DVPGPPMRLVFPEVRLTEVRVVWQPPVDPNGIIMGYQVAYRLDSGDPNQFITIEVGPDTR----Q 1466

  Fly  1311 FESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTR---APARIASFGQ---VVRKAVGTGLV 1369
            |.:.||.....|.|.:||.|..|.|.|...:...|..|   .|.|.....|   ..||     |:
Zfish  1467 FTASSLTPESAYIFRISAKTEQGWGSPAQAVVITTEIRERPQPPRQLRVPQDHVQSRK-----LL 1526

  Fly  1370 LECLAVGNPT-------------PRARWLTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCT 1421
            |..:..|:.:             |...|:|....::.       |..:.::.|::...|......
Zfish  1527 LNWVPGGDGSSPVRYFTLQTQELPSGEWITHSSAISH-------NYSSWEVDRLKPFTSYKLRMM 1584

  Fly  1422 ANNLFGSDEIQYQVIAMK-----PPSAPQI-IVQYASADSIRVSWDAP--DDGGAPLQGYTISY- 1477
            |.|..|..:...:..|:.     |..||.| .|:.::..|:.|.|..|  :.....|.||.:.| 
Zfish  1585 ATNDVGDSKYSQETDAITTLQDVPDEAPMIQSVKPSTTTSVLVQWQTPKEESVNGVLVGYRLYYR 1649

  Fly  1478 ------------HTAGESWSITELLPENNAFTISG----------LKCGNQYIIKMSAHNMVGSG 1520
                        .....|...|||..::...|:|.          |:...:|.|.|:|:|::|..
Zfish  1650 ELQYDSTPQDSKRPVNSSQLRTELTAKSTVKTVSNPSLTEFELTQLQKYRRYEIVMTAYNVIGES 1714

  Fly  1521 VASEEINVWTKGKA--SQAPNANELIATNATCVNLKLSSW-------QNG---GCSIHHFSIEHR 1573
            ..|..:.|:. |:|  |.||...::...::|.:.::   |       |||   |..|.::.::  
Zfish  1715 PPSAPVEVFV-GEAAPSVAPQNIQINTLSSTQLEVQ---WEPPPAETQNGIIQGYKILYWEMD-- 1773

  Fly  1574 PLGDIRWTVVTSDISNAEENRENLIF--------CDFLPAKWYQLRISATNDA----------GK 1620
                          |..|..|..::|        .:.....:|.:::.|.|.|          |:
Zfish  1774 --------------SQNETERVKILFRPETNMRLKNLTSYTYYMVKLLAFNAAGDGPFSEPRRGR 1824

  Fly  1621 TTE------------HYHFSTTNID-GITIPPPSVFPSENDLMNNLINSTNPTSGDWFATLIVVV 1672
            |.:            ....||.|:. |..:.|..|...    ...:...|.|..|       |..
Zfish  1825 TLQAAPSAPSFISFSEVTSSTLNVSWGFPLSPNGVVEG----YRVVYEPTAPIQG-------VTK 1878

  Fly  1673 IITVSI----------------ITIALTIKHRRTLCGPIAEGYESRTLPGDYKEDHENRRNQQVY 1721
            ::||.|                :|....::.:....||.||..                     .
Zfish  1879 VVTVDIRGSWQRWLKVRDLTKGMTYCFRVQAKTIAYGPEAEAN---------------------I 1922

  Fly  1722 SASPVKTVDKGNESEMYEISPYATFSV-----NGGRTGAPAKTPTRAVAAQTPLDYTMQFKTFGH 1781
            :|.||    ||:.....|:|...|.|:     ..|.|||...|           .|.::    ..
Zfish  1923 TAGPV----KGSPGSPVEMSITKTGSMLNIQWTAGETGAGHVT-----------GYVIE----AR 1968

  Fly  1782 PEGENLNATAYPLLPSSGFGHVKSKSSWHKQRYYNTEDESTLSKSMTIVAGSQAGHSKKSNGGRS 1846
            |..|.|..|....||.:...|..|.....:          .:|....::|.::.|:      |..
Zfish  1969 PSDEGLWDTFVRHLPPTSTSHSVSLDRLRQ----------GISYQFRVLAVNEFGY------GEP 2017

  Fly  1847 AKSSAACSGVVAGSESDTSISPSTEFSNMPTYR--------VPC-------------------KS 1884
            :..|||.|..|     ||           |.|.        ..|                   |.
Zfish  2018 SAPSAAMSAQV-----DT-----------PFYEEWWFLIVLALCGLILLLLVVFGLVLHGQNRKY 2066

  Fly  1885 SRSSDGRAVVDMFRPDSSTES--NNDQGSPAPERRHNTPRHVLGMGMAMGLGGGGGGGVGGGNGP 1947
            .....|:||       |:.|.  ..|.|.......::.|.||.|:.:..          .|...|
Zfish  2067 KSCGTGKAV-------STVEETVTLDNGGFTALELNSRPVHVKGVFLRK----------NGTRSP 2114

  Fly  1948 AEKRSAGQR-------SRKHGSAAQQPSNQTLERRKCPGSSNSLDSEVDAE 1991
            .....||.|       |..:|..:.: |....||......|.:.|||.:.|
Zfish  2115 PRPNPAGLRYSDEDICSNYNGVVSTE-STALTERPAEMSESEATDSECEEE 2164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 15/76 (20%)
Ig 56..125 CDD:143165 14/68 (21%)
I-set 246..337 CDD:254352 24/107 (22%)
Ig 264..334 CDD:143165 18/80 (23%)
I-set 345..433 CDD:254352 17/88 (19%)
Ig 358..431 CDD:143165 16/72 (22%)
Ig 456..533 CDD:143165 24/77 (31%)
IGc2 553..619 CDD:197706 21/67 (31%)
I-set 634..724 CDD:254352 23/106 (22%)
ig 645..712 CDD:278476 14/80 (18%)
IG_like 734..815 CDD:214653 21/163 (13%)
Ig 745..815 CDD:299845 19/152 (13%)
I-set 820..913 CDD:254352 23/126 (18%)
Ig 838..920 CDD:299845 22/112 (20%)
FN3 917..1033 CDD:238020 29/119 (24%)
FN3 1040..1142 CDD:238020 36/112 (32%)
fn3 1150..1237 CDD:278470 32/89 (36%)
FN3 1263..1345 CDD:238020 25/82 (30%)
Ig 1350..1436 CDD:299845 17/101 (17%)
IG_like 1358..1436 CDD:214653 15/93 (16%)
FN3 1441..1530 CDD:238020 27/114 (24%)
FN3 1542..1620 CDD:238020 15/105 (14%)
sdk1aXP_009297968.1 I-set 125..208 CDD:254352 20/95 (21%)
Ig 125..204 CDD:299845 20/91 (22%)
IG_like 222..302 CDD:214653 26/96 (27%)
Ig 236..287 CDD:299845 16/67 (24%)
Ig_3 322..394 CDD:290638 19/82 (23%)
I-set 323..412 CDD:254352 23/99 (23%)
I-set 416..505 CDD:254352 19/95 (20%)
Ig 436..500 CDD:299845 16/68 (24%)
I-set 510..600 CDD:254352 29/97 (30%)
Ig 527..600 CDD:299845 26/80 (33%)
I-set 605..693 CDD:254352 28/101 (28%)
Ig 610..693 CDD:299845 27/96 (28%)
FN3 697..788 CDD:238020 19/97 (20%)
fn3 800..886 CDD:278470 12/85 (14%)
FN3 901..997 CDD:238020 11/95 (12%)
FN3 1002..1090 CDD:238020 18/92 (20%)
FN3 1100..1196 CDD:238020 28/117 (24%)
FN3 1206..1301 CDD:238020 36/111 (32%)
FN3 1308..1397 CDD:238020 32/91 (35%)
FN3 1408..1501 CDD:238020 27/96 (28%)
FN3 1507..1602 CDD:238020 18/106 (17%)
FN3 1616..1722 CDD:238020 23/105 (22%)
FN3 1732..1825 CDD:238020 18/111 (16%)
FN3 1830..1919 CDD:238020 16/99 (16%)
FN3 1931..2021 CDD:238020 22/120 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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