DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and igsf9a

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_005155702.1 Gene:igsf9a / 557459 ZFINID:ZDB-GENE-060503-288 Length:1619 Species:Danio rerio


Alignment Length:1879 Identity:352/1879 - (18%)
Similarity:604/1879 - (32%) Gaps:575/1879 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 IDWLHNG------KPLQANNALTTGRD-NIRFLSKSSLLVQNVGRRDRGVYQCLV------ENQR 423
            |:|:..|      ..|..:..:....| .:.....:||.:..:...|.|.|:|.:      ..:.
Zfish    57 IEWVRQGFDTPIFMQLGVHPRVHPDYDGRVSLFGGTSLQMSGLQLEDEGWYECRILPLDQTTEEA 121

  Fly   424 ASAQAMAELK------LGDTVPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDV 482
            .|:.:...|.      |.:|.|..:..|:      |..::|||:|.|:|.|...|..|..||.. 
Zfish   122 GSSGSWTRLSVTAPPVLTETSPPEVEVFV------GRSLTLKCAAQGNPRPTITWSKDGAPIKP- 179

  Fly   483 SLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGP 547
              .|:..:     ::|.|..|.    |..:..|.|:|..|||.|:..|..||.:.|||.: .|.|
Zfish   180 --QHKVKM-----VNGSVSFHA----VSREAAGQYQCYTSNSEGNATHVTRLKIIGPPVI-IIPP 232

  Fly   548 IKAV--AGEDIIVHCPFAGYPVEQIR-WEKAHQELTTSNHYELAS------VADGGQLVIKNVEP 603
            ...|  ..:|..:.|.....|..... |::...::     |.:.|      |...|.|:|..:.|
Zfish   233 SDTVLNMSQDAKLKCQAEADPPNMTYVWQRQGVDI-----YHIDSLKSRIKVIVDGTLLISRLAP 292

  Fly   604 GRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPK--NLQEGGRAQITCAVSSGDMPIYF 666
             .|.|.|||:..:...........|.|..|..:  .:.||  .|..|.|..|.|.|.:.....:.
Zfish   293 -EDSGNYTCMPTNGLPVSPSASAVLTVQHPAQV--IQMPKLTFLPTGMRGAIVCPVRAEPPLSHI 354

  Fly   667 SWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWR 731
            .|.||                               ||                           
Zfish   355 DWIKD-------------------------------GK--------------------------- 361

  Fly   732 YEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYM 796
              |:|..:..|.|::    ::|                           |:::....|:..|.|:
Zfish   362 --PLDLGMYPGWTLA----SDG---------------------------SIVIATVNDDAAGVYI 393

  Fly   797 CQATNEIG-AGLKKTIRINVNEPARFEQSARNISSRRNDPVT---LDCHAKGDEPITIGWTQNNG 857
            |...|..| .|..:...:.:.:|..|:.|.||  ..|.|..|   :.|...|:....:.|.:...
Zfish   394 CTPYNSFGTTGQSEPTTVILQDPPSFKVSPRN--EYRQDVGTMLVIPCQMVGNPAPKVNWRKIGA 456

  Fly   858 RIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAE-QIIFLAVQERPDTPS 921
               .....|::|.       :..|.:....:...|.:.|.:.|...... :.:.|.:...|...|
Zfish   457 ---ATRSLFTLAG-------NGSLILHPLSKDHQGEWECSSSNRVATVSIKTMVLVLGTSPHAVS 511

  Fly   922 HLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTS 986
            .:.:.. |:....:||...|||.      ..|...:.|.|..........:|             
Zfish   512 SVSVIP-GTNQANVSWVAGFDGG------YTQTFTVWYKQVSAGRTEEKQEW------------- 556

  Fly   987 ISRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQEEAPT----EAPSNVQV 1047
            :|.| |.....|.:|..|.|||.:...:.|.|:|....::|.|.:.|.:..|.    |.|:|:.|
Zfish   557 LSFS-DLSTENSLLVTNLLPATEYQFSVMAQNKIGTGPFSEIITVTTLDALPVVAKLEPPTNLSV 620

  Fly  1048 QTGGESELIVTW-----QIPPRESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGW---- 1103
            ....|..|:: |     :.||.:|:                      ||.|.|:.   ..|    
Zfish   621 NKSSEGFLLL-WSAPHSKSPPIDSF----------------------VVQSRLEG---GEWDNLK 659

  Fly  1104 -----ATTKATLRGLRKYSRYAVTIRAMN----SFGSGPWSAAIFGTTAEGVPEAAPQNVNCTAL 1159
                 |.:|..|.||.|..:|.:.:.:.:    |..|...|.:.||             :|....
Zfish   660 EDISPAESKIFLPGLCKDCKYELRLLSQHGDQLSMPSPSISVSTFG-------------MNMRPA 711

  Fly  1160 SSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKLEIKRTSNLETYLHTLHKA--SNYS 1222
            ||:.|..     |.....|::.|..:|...:|..:.....:..||:......:..|..|  .|.|
Zfish   712 SSRLLDF-----PNHIMAGVMGGVGLLCLVLVLTLAIACFISYKRSRRRRQNIKDLPPAMDKNAS 771

  Fly  1223 IRVLAYTATGDGLASHPL--------------FCQTD------DDVPDA-PAAIKAAALTADSIL 1266
            :.:...|.....|.:|||              |..:|      ..:|.| |.:  ..:|....:.
Zfish   772 VNIPDDTLKQRLLPAHPLSTSSSASNHSSLDKFSHSDFHDLRQHHLPQANPPS--HHSLPESHLQ 834

  Fly  1267 ISWLTPKN-----RNGIISHYTVYSRE--AGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEF 1324
            :|.|.|.:     ..|....:.|:..|  :....|.|.:   .::|.:..:..|||        |
Zfish   835 LSSLAPVSSVEFIHRGPDGRFVVHPGEGDSNFSSQIKRN---PNQNSHQASDGSRS--------F 888

  Fly  1325 WVSASTSVGEGEPTSVIAQATNTRAPARIAS-----FGQVVRKAVGTGLVLECLAVGNPTPRARW 1384
            .:..|.|:.        :.....|.|..:.|     ||..:..:..|..|::.|::..       
Zfish   889 RIQKSQSLR--------SYMDEQRRPPFVLSVDLPPFGSNIPSSSRTRAVVKHLSLNG------- 938

  Fly  1385 LTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQ 1449
              ...|:......:|.:         :.|||.:  |:.:.|:...|   ..:..|.|...   ..
Zfish   939 --HYMPILEKEIMDVPD---------QTSLSSD--CSDSYLYAHSE---STLGQKSPKRD---TN 984

  Fly  1450 YASADSIRVSWDAPDDGGAPLQGYTISYHTAGESWSITELLPENNAFTISGLKCGNQYIIKMSAH 1514
            :::|.::.:..:...:.|...:..|::...       .||..|...:|:.         :..|:|
Zfish   985 HSTASTLVLQMEHEREQGNLSRCLTLARER-------EELERELRKYTVD---------LNSSSH 1033

  Fly  1515 NMVGSGVASEEINVWTKGKASQAPNA------NELIATN--------ATCV----NLKLSS---- 1557
            ....    .|..|:|...:|| .|..      ..:::.|        |:|:    ..|:||    
Zfish  1034 EQTD----DEYGNLWKTQEAS-TPQVKYQTMRQSILSENTGMFKRRAASCIPWEERHKISSANLL 1093

  Fly  1558 ------------WQNGGCSIHHFSI--------------EHR------------PLGDIRWTVVT 1584
                        .||.|    :.|:              |||            |:...|:.|:.
Zfish  1094 PLHKSYEKDIKYRQNQG----YNSVQRSRYQRSRSLDREEHRKSHTWDQRRSKTPVESSRYCVID 1154

  Fly  1585 SDISNAEENRENLIFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDL 1649
            ..|...    ||...|:...|:....|          ::||.            .|.::||    
Zfish  1155 ELIYKL----ENPQTCEGPRARMTSSR----------SQHYF------------DPCIYPS---- 1189

  Fly  1650 MNNLINSTNPTSGDWFATLIVVVIITVSIITIALTIKHRRTLCGPIAEGYESRTLPG-DYKEDHE 1713
                     |....|                  .|::.......|:.: |...::.| |::..|.
Zfish  1190 ---------PGDQQW------------------RTVQRSNREIHPVGD-YSEMSVDGPDFESQHA 1226

  Fly  1714 NRRNQQVYSASPVKTVD----KGNESEM------YEISPYATFSVN--GGRTGAPAKTP------ 1760
            |.|: .|.|....:|:|    :.:|.||      ..:|......:|  ..:|.:|....      
Zfish  1227 NSRS-TVRSEHSYETLDYDRPRLSELEMDRLVKPGHVSSRKDKKLNNWSSKTESPMNVSERMPQR 1290

  Fly  1761 TRAVAAQT--------PLD---YTMQFKTFGHPEG--ENL----NATAYPLLPSSGFGHVKSKSS 1808
            |.::.::.        .||   |..||.|   |:.  ::|    :.|..||:........|.|||
Zfish  1291 TNSIGSKIRDQHQSTHSLDSKLYKDQFLT---PDAWIDSLTLPQDCTMSPLVSRPNSVANKPKSS 1352

  Fly  1809 WHKQRYYNTEDESTLSKSMTIVAGSQAGH------SKKSNGGRSAKSSAACSGVVAGSESDTSIS 1867
                  .|.:|.|      .:.:|||: |      ||..||..:.:.|.  ..:::...:.|::.
Zfish  1353 ------PNLQDHS------FVPSGSQS-HVPQRRASKSPNGFTNDQHSQ--RNLMSERNAHTALP 1402

  Fly  1868 PSTEFSNMPTYRVPCKSSRSSD--------GRAVVDMFRPDSSTESNNDQGSPAPERRHNTPRHV 1924
            |..  |::|....|..|:..|:        ||...||...|...|.|..:.....|..:.:    
Zfish  1403 PGG--SSLPRAYYPSLSTLPSERRNQSHQAGREEEDMDGQDMDVEINIYRKGSETEGSYRS---- 1461

  Fly  1925 LGMGMAMGLGGGGGGGVGGGNGPAEKRSAGQRSRKHGSAAQQPSNQTLERRKCP-------GSSN 1982
                         .|....|.|..:..::.|.|......:...:.:..:|.:..       |..:
Zfish  1462 -------------YGSQSSGRGSMDAPNSRQFSLSPPLTSSPETTEDSDRDEAALLDPEQNGRRD 1513

  Fly  1983 SLDSEVDAETAASLAASIAAMAGSGAGADLSGGFRPPAGFHDGREPGDHSDCEREQRAL 2041
            |:|...:.|.|......:.:|..:|...:..|..|..:..   .:..|.|:.:::|:.|
Zfish  1514 SVDESYEWEPAYVPMRPVVSMNKTGLQKEFKGSQRKQSSI---TKDDDSSNLDQKQQGL 1569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352 12/73 (16%)
Ig 358..431 CDD:143165 12/71 (17%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 16/72 (22%)
I-set 634..724 CDD:254352 13/91 (14%)
ig 645..712 CDD:278476 11/66 (17%)
IG_like 734..815 CDD:214653 13/81 (16%)
Ig 745..815 CDD:299845 9/70 (13%)
I-set 820..913 CDD:254352 17/96 (18%)
Ig 838..920 CDD:299845 11/82 (13%)
FN3 917..1033 CDD:238020 26/115 (23%)
FN3 1040..1142 CDD:238020 27/119 (23%)
fn3 1150..1237 CDD:278470 17/88 (19%)
FN3 1263..1345 CDD:238020 15/88 (17%)
Ig 1350..1436 CDD:299845 15/90 (17%)
IG_like 1358..1436 CDD:214653 11/77 (14%)
FN3 1441..1530 CDD:238020 12/88 (14%)
FN3 1542..1620 CDD:238020 22/131 (17%)
igsf9aXP_005155702.1 IG_like 27..110 CDD:214653 10/52 (19%)
Ig 35..111 CDD:299845 11/53 (21%)
I-set 140..221 CDD:254352 29/98 (30%)
IGc2 151..212 CDD:197706 23/72 (32%)
Ig 233..318 CDD:299845 18/90 (20%)
I-set 233..318 CDD:254352 18/90 (20%)
Ig <349..402 CDD:299845 16/143 (11%)
IG_like 423..502 CDD:214653 14/90 (16%)
Ig 435..498 CDD:143165 9/72 (13%)
FN3 507..602 CDD:238020 26/115 (23%)
fn3 614..696 CDD:278470 22/107 (21%)
PHA02666 1105..>1312 CDD:222914 45/269 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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