DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and kirrel3l

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001092814.2 Gene:kirrel3l / 557315 ZFINID:ZDB-GENE-070831-1 Length:755 Species:Danio rerio


Alignment Length:674 Identity:155/674 - (22%)
Similarity:250/674 - (37%) Gaps:146/674 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   447 EQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVD--------MSGDVIS- 502
            :|.|..|..::|.|...|. .....|..|.           .|:|...|        :.||.:| 
Zfish    26 DQVVVAGQSVTLPCVIVGY-RGMVQWTKDG-----------LALGGERDLPGWVRYSLMGDPLSG 78

  Fly   503 --HLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDII---VHCPF 562
              .|.|......|..:|:|.|:.: |...|.|:|.|..||    ..||  |.|..::   .|.|.
Zfish    79 EHSLVIDSAELGDDAIYECQATQA-GLRSHRAKLTVLVPP----SDPI--VEGGPVVRLKAHTPH 136

  Fly   563 -------AGYPVEQIRWEKAHQELTTSNHYELASVADGGQ--------LVIKNVEPGRDQGIYTC 612
                   ...|..:|.|.: ..|:..:..|..:.:.||.:        :|.::.:.||   .|||
Zfish   137 NLTCRASGAKPAAEITWYR-DGEIMQNAIYSKSLMEDGKRETAVSMLPMVPEDSDSGR---TYTC 197

  Fly   613 IVRSRAGEEARR-DMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIP 676
            .|.:.|....|: .:.:||..||.:.....|:.:.||.:....|:.|:......:.|.|  ..:|
Zfish   198 RVLNPAAPAGRQTSVTINVQHPPSVTLSVQPQTVMEGAKVLFICSASANPEITGYRWSK--GGVP 260

  Fly   677 SSLQITEKKEEFYSLLVFKDISARHS---GKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTA 738
                |:|...:  ||    :::|.||   ...:|..||:....|.:..:.|:..||...||....
Zfish   261 ----ISEANGD--SL----EVTADHSYFTDPVSCEVSNSVGSTNVSTLVDVQFGPRLLTEPKPQI 315

  Fly   739 IMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQA-TNE 802
            :.:|...:..|...|.|..|:.|.|   :||   ..:...:::|.|...|.:|.|.|.|:| ...
Zfish   316 VDIGMDAAFTCSWTGNPPLTLAWTK---QGS---NVVLSNSNTLQLKAVTQDDTGTYTCKAIVPR 374

  Fly   803 IGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKG---------DEPITIGWTQNNGR 858
            ||.. ::.:.:.||.|......|...:.:         |:||         ..|..|.||..:..
Zfish   375 IGVA-ERDVTLTVNGPPIITAEATQQAIK---------HSKGKLECLVGSSPPPDKIVWTFGDMM 429

  Fly   859 IDL-NNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGV-YRCIAENPYGRAEQIIFLAVQERPDTPS 921
            :.. ::.|||:..:.:::||.|.|.:..:...|..: |.|.|.|.:|....::.|..||.  .|.
Zfish   430 LSSGSSGRFSVQTVNSDQGVLSSLILSETLAQDFQLRYNCTAWNRFGTGTALVTLEEQEA--LPL 492

  Fly   922 HLEI---------FEV---------------GSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQS 962
            .:.|         |.|               |.:..:||       .|.:...:|.       ..
Zfish   493 LIIIGASVGGGCVFIVCVITLVSICCRHNAKGKKGTRLS-------KSDIRVQIVH-------SD 543

  Fly   963 HGSLAAAGGDWNGHVINVSLPSTS----ISRSYDSDL--RESAIVAGLTPATT--FLIRMQAINE 1019
            |.  ||.|.|....|.....|::|    .||:..|||  .|....:.:...|.  :.:|......
Zfish   544 HN--AARGNDDEEDVKEPMAPNSSESPGTSRTEHSDLLEEEDDERSDIKDPTNGYYNVRAHEDRH 606

  Fly  1020 IERSAYTEAIVLKTQEEAPTEAPS 1043
            |.|:.::|..........||:.||
Zfish   607 ITRTGFSEYANNARPVYTPTQLPS 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 19/87 (22%)
IGc2 553..619 CDD:197706 17/83 (20%)
I-set 634..724 CDD:254352 20/92 (22%)
ig 645..712 CDD:278476 16/69 (23%)
IG_like 734..815 CDD:214653 20/81 (25%)
Ig 745..815 CDD:299845 18/70 (26%)
I-set 820..913 CDD:254352 22/103 (21%)
Ig 838..920 CDD:299845 23/92 (25%)
FN3 917..1033 CDD:238020 28/147 (19%)
FN3 1040..1142 CDD:238020 2/4 (50%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
kirrel3lNP_001092814.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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