DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and sdk1b

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_017211454.1 Gene:sdk1b / 555553 ZFINID:ZDB-GENE-090311-17 Length:2292 Species:Danio rerio


Alignment Length:2281 Identity:478/2281 - (20%)
Similarity:728/2281 - (31%) Gaps:797/2281 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 HFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVENTE------------ 148
            |||  |:....|......:   :.|...:.|::. :|..::.||.:.....|.            
Zfish    94 HFP--LSSLTSTSAASKDF---SFNGGQSTLTKG-KVKGIINRQGNTAKAMTGKARCGMWAWIFA 152

  Fly   149 -VYLGNSALIKCAIPEYVRPYVRV----ASWH-RGEEILLPDLSDVAG----------------- 190
             |:|.|:.:::.   :...||.:.    |..| .|..::|..|::.:.                 
Zfish   153 LVFLWNTHMLRA---QDTAPYFKTETGGAQTHLEGNRLVLTCLAEGSWPLEFKWMRNSTDITEYT 214

  Fly   191 ---RYVVLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKP 252
               ||.::         |::.||..: :.|.|.|.:....|....|.:...:....|..|.|   
Zfish   215 PEYRYTIV---------SLKREDAGV-YQCAVRNRMGALIQTRADVRVAYMDNFAELEQRKT--- 266

  Fly   253 VMEIHVERGNDVHL-PCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAG 316
                 |.:|....| |..:...|.|..||:|  |...:  ||:.:..|.....|::.:....|||
Zfish   267 -----VSQGRAAVLNPPAVTSFPRPQVTWFR--DGVKI--IPNHRVAITLDNQLVVLSTAAADAG 322

  Fly   317 KWICQASNQFGEQRIEIRLSVNSYVSVH------------------------ILPQ-VQIVNSGG 356
            ::..||.|   |:..|.:.|.:.|:|:.                        |.|: ..:|....
Zfish   323 RYYVQAVN---ERNGENKTSPSIYLSIAINKRNRGSLADVIAPAELVAPVIVIAPKNTSVVAGAS 384

  Fly   357 TANFNCTTTGSAIDAID--WLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQC-- 417
            .|...|.....::|.:.  |..||.      .||.|.|:.    ...|::.|....|.|:|.|  
Zfish   385 EATLECVANARSLDRLQVFWKRNGV------RLTAGVDSF----GRRLVISNPTSADGGLYVCEA 439

  Fly   418 -LVENQRASAQAMAELKLGDTVPEL-------IYTFIEQNVRPGPLISLKCSASGSPPPQFAWLL 474
             |..:.:.|.:|.|.|.:.:: |..       :...:|:||      .|:|.|.|.|.|:..|..
Zfish   440 TLRNSSQKSTEAKAYLSVLES-PHFTSKPKRYMIAEVEKNV------ELQCHAKGVPTPKLEWFK 497

  Fly   475 DSQPIMDV-SLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNV-- 536
            |:.|:..: :..::......|         |.:..::|||.|:::|.|.|:.|.:|....|.:  
Zfish   498 DAIPLSTLNNSRYKLTTSSMV---------LQVRRIQPDDAGIFQCFAENTAGEIQAHTNLVITS 553

  Fly   537 YGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNV 601
            ..|.:......|....|...:..|..:|.|...|.|.|..|.|.:.                   
Zfish   554 MSPLFTTPPSDITVTDGTSAVFTCDTSGAPKPAIVWRKGSQVLASG------------------- 599

  Fly   602 EPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYF 666
                                       :|.:|      :|  .|.|.|..||        :||  
Zfish   600 ---------------------------SVQTP------RF--TLLESGGLQI--------LPI-- 619

  Fly   667 SWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWR 731
                    :||.                       :|.|||.|||....||.|..|.|.......
Zfish   620 --------MPSD-----------------------AGNYTCLASNTEGLVNATVALTVLSRTFIS 653

  Fly   732 YEPMDTAIMLGNTISINCEAEGYPIPTI--TWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGY 794
            ..|.|..::.|.|..::|.|...|..|:  :|.||.       ||||:                 
Zfish   654 TPPEDQRVIKGTTAVLHCAATHDPRVTVRYSWKKGT-------KPLSV----------------- 694

  Fly   795 YMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRI 859
                                                                       ...||:
Zfish   695 -----------------------------------------------------------STGGRV 700

  Fly   860 DLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLE 924
            .:.               :..|.|..:...|.|.|.|...:|.|...:...|.|.|.|.:|.:|:
Zfish   701 SMK---------------EGSLQISQTWSGDIGDYTCRVISPAGNDSKSARLEVIELPHSPRNLQ 750

  Fly   925 IF--EVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSI 987
            :.  |..||||.|||.||||||||:|.|::::            :.....|..::.:|| |:.: 
Zfish   751 VALNETDSRTVLLSWVRPFDGNSPLLHYIIEF------------SENNSPWKVYMDDVS-PTLA- 801

  Fly   988 SRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYT-EAIVLKTQEEAPTEAPSNVQVQTGG 1051
                      |.:|.|||||.|:..|:.|:|::.|..|: |...|..:||.|:..|.|:......
Zfish   802 ----------SLLVIGLTPARTYQFRVCAVNQVGRGQYSAETNRLMLREEPPSAPPKNIVASGRT 856

  Fly  1052 ESELIVTWQIPPRESWNGELIGYTV-----NCSEEKQNINFISV-VNSSLKSTIVSGWATTKATL 1110
            ...::|.||.||....||.|.||.:     ....|.|..|..|. :|..|...::.         
Zfish   857 NQSIMVQWQPPPEPQLNGVLRGYVLRYRLAGLPGEFQLKNITSAEINYCLIGELII--------- 912

  Fly  1111 RGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQF 1175
                 :::|.:.:.|....|.|.:|.:....|.:|||.|.||:|...||:|.::|.:|..||.||
Zfish   913 -----WTQYEIQVAAYTGAGLGVYSQSATEYTLQGVPTAPPQDVEAVALNSTTIKFTWTPPPQQF 972

  Fly  1176 HGGIIQGYKILYRPIVHQIDFPAKLEIK---RTSNLETYLHTLHKASNYSIRVLAYTATGDGLAS 1237
            ..||.||||:|..| .|..|....:.|.   ..|....|:..|.|.:.|...||.:|..|||.||
Zfish   973 INGINQGYKLLVWP-EHCPDCITMVTIAPEFHGSRHYGYVSNLRKFTWYETAVLCFTTPGDGPAS 1036

  Fly  1238 HPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMVRV 1302
            .....||..|.|.....:....:...|:.|||..|:::||||:.|.:..:|||:.....:..:..
Zfish  1037 TSQLIQTHVDKPGPVTQLSFTEILDTSLRISWQEPEDKNGIITGYVLSWQEAGQNETLVSQTLSN 1101

  Fly  1303 DENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTG 1367
            ....|.||    .|.....|...|:|.|..|.|..||                      ..:.||
Zfish  1102 STLAYKVT----GLTSLTTYALQVAAVTQAGVGASTS----------------------STISTG 1140

  Fly  1368 LVLEC------LAVGNPTPR----------------ARWLT---------------------RDR 1389
            |..|.      |.:.|.:||                ::|:.                     ||.
Zfish  1141 LPPELPGAPSNLVISNISPRSVTIQFSPGSDGKTEISKWIVEGQVVIVGEEEKEAEWKVLYERDS 1205

  Fly  1390 P--------------------------VTFSPF-------------------------------- 1396
            |                          |..|||                                
Zfish  1206 PPASDTLEIPNLIPFTQYRFRMKQVNIVGSSPFSESSRLMQTLQSSPDVAPTELVVFSASETSLR 1270

  Fly  1397 -------------------------------------------YEVTNEG-------NLKI---- 1407
                                                       .|||.||       .|.|    
Zfish  1271 IRWEPLPEAAYNGNPESVGYRVRAQRADGFGQPRMETVSDRLSCEVTVEGLEEWTDYELSIQAFN 1335

  Fly  1408 ----------------------------------------------HRVEGSL------------ 1414
                                                          |:..|.:            
Zfish  1336 SIGPGPWSSHVLGKTKESVPSGAPENVSAEAMSSTSVLVTWGSVPEHQKNGHILGYKVLYREKDS 1400

  Fly  1415 ---------SGNYT--CTANNLFGSDEIQYQVIAMK-----PPSAP---------------QIIV 1448
                     :||.|  ....||......:.||:|..     |||.|               :::.
Zfish  1401 DRAPQAHLVNGNQTHMLLLRNLSKFTVYEIQVLAFTRVGDGPPSLPPTAERTKDDVPGPPVRLMF 1465

  Fly  1449 QYASADSIRVSWDAPDDGGAPLQGYTISYH---TAGESWSITELLPENNAFTISGLKCGNQYIIK 1510
            ......|:||.|..|.:....:.||.|||.   .....::..|:......||::||...:.|:.:
Zfish  1466 PEVRLSSVRVVWQPPSEPNGIIMGYQISYRLDINDPNKFTTVEVGSNARQFTVTGLMPESAYVFQ 1530

  Fly  1511 MSAHNMVGSGVASEEINVWT-KGKASQAPNANELIATNATCVNLKLSSWQNGG---CSIHHFSIE 1571
            ::|..:.|.|.|.|.|.:.| |.:..|||....:.........|:| .|..||   ..:.:|:::
Zfish  1531 ITARTLQGWGPADEAIVITTEKRERPQAPRRLTVPQKGVESYKLRL-HWMAGGDGSSPVRYFTLQ 1594

  Fly  1572 HRPLGDIRWTVVTSDISNAEENRENLIFCDFL-PAKWYQLRISATNDAGKTTEHYHFSTTNIDGI 1635
            ...|.|..|...||.|.:...:.|    .|.| |...|:.|:.||||.|                
Zfish  1595 TLELPDGDWKTHTSSIPHNNSSWE----VDRLKPYTSYKFRMMATNDVG---------------- 1639

  Fly  1636 TIPPPSVFPSENDLMNNLINSTNPTSGDWFATLIVVVIITVSIITIALTIKHRRTLCGPIAEGYE 1700
                .|.|..|.:.:..|    ....|:....|:|....|.|:| :........|:.| |..||.
Zfish  1640 ----DSAFSKETEPVTTL----QDVPGEAPVILLVKPSTTTSVI-VQWQPPAEGTVNG-ILVGYR 1694

  Fly  1701 --SRTLPGDYKEDHENRRNQQVYS-----ASPVKTVDKGN--ESEMYEISPY-------ATFSVN 1749
              .|.||.:.........||...|     .|..|||...:  |.|:.::|.|       ..|:|.
Zfish  1695 VYYRELPSESNPKVVQSTNQSTISLEFRAKSTFKTVSSPSLTEFELTQLSKYRRYAIVMTAFNVV 1759

  Fly  1750 GGRTGAPAKTPTRAV---AAQTPLDYTMQFKTFG--------HP---EGENLNATAYPLLPSSGF 1800
            |   .:|:..|....   ||.:.....:|.|:..        .|   |.:|.|...|.:      
Zfish  1760 G---ESPSSAPVEVFVGEAAPSVAPQNIQVKSVSSNQLDVEWQPPPVETQNGNIQGYKI------ 1815

  Fly  1801 GHVKSKSSWHKQRYYNTEDESTL--------SKSMT--------IVAGSQAGHSKKSNG--GRSA 1847
             |.     |.|.|...||.|..|        .|::|        :.|.:.||....|..  ||:.
Zfish  1816 -HY-----WEKDRQNETEKELVLFVPETCVHLKNLTSYTSYLVQLSAFNAAGDGPLSTARKGRTL 1874

  Fly  1848 KSSAACSGVVAGSE---SDTSIS---PSTEFSNMPTYRVPCKSSRSSDG---------------- 1890
            :::......|..||   |..::|   |......:..|||..:.:....|                
Zfish  1875 QAAPGSPSRVVFSEVTGSSLNVSWGAPLQPNGVLEGYRVMYEPTAPVHGVSKTVTVDIKGNWQRW 1939

  Fly  1891 -------RAVVDMFRPDSST-------ESNND----QGSPAPERRHNTPRHVLGMGMAMGLGGGG 1937
                   |.||..|:..:.|       |:|..    :|||....:.:..:....:.:....|..|
Zfish  1940 LKVRDLMRGVVYRFKVQARTISYGPELEANITAGPVEGSPGSPLQTSVTKSASALTLHWTKGSEG 2004

  Fly  1938 GGGVGG 1943
            .|.|.|
Zfish  2005 AGPVTG 2010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 7/36 (19%)
Ig 56..125 CDD:143165 6/28 (21%)
I-set 246..337 CDD:254352 24/91 (26%)
Ig 264..334 CDD:143165 20/70 (29%)
I-set 345..433 CDD:254352 23/93 (25%)
Ig 358..431 CDD:143165 19/77 (25%)
Ig 456..533 CDD:143165 20/77 (26%)
IGc2 553..619 CDD:197706 9/65 (14%)
I-set 634..724 CDD:254352 21/89 (24%)
ig 645..712 CDD:278476 15/66 (23%)
IG_like 734..815 CDD:214653 15/82 (18%)
Ig 745..815 CDD:299845 11/71 (15%)
I-set 820..913 CDD:254352 11/92 (12%)
Ig 838..920 CDD:299845 14/81 (17%)
FN3 917..1033 CDD:238020 40/118 (34%)
FN3 1040..1142 CDD:238020 23/107 (21%)
fn3 1150..1237 CDD:278470 34/89 (38%)
FN3 1263..1345 CDD:238020 25/81 (31%)
Ig 1350..1436 CDD:299845 31/309 (10%)
IG_like 1358..1436 CDD:214653 31/301 (10%)
FN3 1441..1530 CDD:238020 25/106 (24%)
FN3 1542..1620 CDD:238020 22/81 (27%)
sdk1bXP_017211454.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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