DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and zgc:112965

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001018542.1 Gene:zgc:112965 / 553735 ZFINID:ZDB-GENE-050522-10 Length:325 Species:Danio rerio


Alignment Length:352 Identity:74/352 - (21%)
Similarity:114/352 - (32%) Gaps:108/352 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 VMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHLPCNIQGNPFPI----FTWYRVSDSAA---LY 290
            |||.:.:   .|..|....|   :....|..|.|||.:. ...|:    ..|.| :||..   ||
Zfish    22 VMLMIAD---GLVVRGPSAP---LSAPLGASVVLPCYVD-EALPVEDLEVEWRR-ADSETLVHLY 78

  Fly   291 PIPSSQRVILSRTL-----------------LLIKNADERDAGKWICQASNQFGEQRIEIRL--- 335
            ....|:..:..:..                 |.:.|...:|.|::.|:..:|...:...|::   
Zfish    79 QDGESRAEVQQQDYHDRAHFFTEEIQHGNFSLRLDNLTAQDEGEYRCRVHSQQDSEETVIKIKDV 143

  Fly   336 ------SVNSYVSVHILPQVQIVNSGGTANFNCTT----TGSAIDAIDWLHNGKP------LQAN 384
                  ..|..||:|:         |.....||:.    |...|:.:.|....|.      |..|
Zfish   144 ERLLVSGTNRSVSIHV---------GEDVTLNCSVDSHITPEHIEEVLWRKTDKDGDILILLYQN 199

  Fly   385 NALTTG------RDNIRFLSKS------SLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDT 437
            |.....      |..:.|.:..      ||.:::|...|:|||.|.|.....||.  |.:.||..
Zfish   200 NKTVPEVGDEQFRGRVEFFTAEIPKGNFSLKLKSVRTEDKGVYMCQVFAGDLSAN--ATVVLGRL 262

  Fly   438 VPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVIS 502
            ....::|.:         :.|..||.||......|:....|..          ||:         
Zfish   263 SFSALHTMV---------LILCISACGSALLPCVWIYSRSPDK----------GQW--------- 299

  Fly   503 HLNISHVRPDDGGLYKC-VASNSMGSV 528
                 ||:....||:.| ..|..:||:
Zfish   300 -----HVQLSVFGLFDCNNLSFCLGSI 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 22/123 (18%)
Ig 264..334 CDD:143165 18/93 (19%)
I-set 345..433 CDD:254352 24/109 (22%)
Ig 358..431 CDD:143165 22/94 (23%)
Ig 456..533 CDD:143165 17/74 (23%)
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
zgc:112965NP_001018542.1 IG_like 36..141 CDD:214653 21/109 (19%)
Ig 44..141 CDD:299845 20/98 (20%)
V-set 151..250 CDD:284989 25/107 (23%)
IG_like 153..257 CDD:214653 27/114 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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