DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and nrm

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster


Alignment Length:2420 Identity:478/2420 - (19%)
Similarity:775/2420 - (32%) Gaps:865/2420 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SGLRVPTFLLEPAPRLLFGNDTGAQV-----------------TCTAHGS-PPPLVTWVLRDGSL 79
            :|.|:...:|.|...::..:..|.::                 |||...: |.|.|:|......|
  Fly   143 NGYRIELRVLVPPTEVVILDAKGDRIKNGSVVGPMQERQSLKATCTVRNTRPQPEVSWFRGTKRL 207

  Fly    80 ATQVPGLRKISG--NGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHV 142
            .|..|....:.|  ..||.....|:   |.|:.: ...||..:.|       :|...|.:....:
  Fly   208 TTYSPTHDLVDGLYTSTLELDWTLS---REDLAQ-DIECRVKSAA-------IQNVTVTKFSVDL 261

  Fly   143 HVENTEVYL---------GNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAAS 198
            .|..|.:.:         |:..::.|.| ...||.|.: :|:....|:               :|
  Fly   262 QVRPTSIDINGVKHHTVQGSKVVLTCDI-HGARPAVNL-TWYNTTTII---------------SS 309

  Fly   199 GDLYVRSVRSE-----DGLMKF-SCLVTNTLNGERQR-----SDAVMLQV---KELSKNLAPRTT 249
            |:..:..|||:     ||.... |.|:.|....|..|     ::.::||:   |.:|..|.....
  Fly   310 GENEITEVRSKSLEKSDGTFHTQSELIFNATRFENDRVFRCEAENIVLQINREKPISSALTLEVL 374

  Fly   250 QKPVME-----IHVERGNDVHLPCNIQGNPFPI--FTWYR------VSDSAALYPIPSSQRVILS 301
            ..||::     |.......|.|.|....||..:  ..|||      |:|:.. |...:|:.|   
  Fly   375 YPPVVKVSPSAITANTSEIVLLNCEYFANPASLTQVEWYRNDILVNVNDTTH-YKGGNSENV--- 435

  Fly   302 RTLLLIKNADERDAGKWICQASNQFG----EQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNC 362
              .|:||:.::.|.|.:.||.||..|    :|:|.:.:.....|.:.::|:..:..|..:   |.
  Fly   436 --ALVIKSTEKEDIGNYSCQLSNNIGKGTSDQKINLDVQYAPTVEILMIPEGPVKESDES---NV 495

  Fly   363 TTTGSAIDA-------IDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVE 420
            |...:.:||       :.|..|...|:........|:::..:..|.||::::||.....|.|  |
  Fly   496 TLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHIDPSKLLLESIGRGFFYNYSC--E 558

  Fly   421 NQRASAQA-MAELKLGDTVPELIYTFIEQNVRPG-------PLISLK-------CSASGSPPPQ- 469
            ...|:... .:|.|      ||:..:     .||       ||:::|       ||......|: 
  Fly   559 GFNAAGWGPRSEDK------ELLVHY-----EPGPAALSHFPLVAVKKKSVTFSCSVDDPGFPES 612

  Fly   470 --FAWLLDSQ-PIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMG-SVQH 530
              |.||...: |:.|:                 |.....:..|..|....|.|.|.|..| .|..
  Fly   613 NRFRWLRGGRGPLQDI-----------------VTKDWTVEPVGLDSRTNYSCYAYNEGGKGVMA 660

  Fly   531 SARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQ 595
            :..|.|:.||:                                                      
  Fly   661 TVNLEVHAPPF------------------------------------------------------ 671

  Fly   596 LVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSG 660
             .|||:.|      ||.|:.|               ||                .|.:||.:.. 
  Fly   672 -FIKNLPP------YTGILHS---------------SP----------------NATLTCRIEC- 697

  Fly   661 DMP-IYFSWKKDDSSI---PSSLQITEK-------KEEFYSLLVFKDISARH-------SGKYTC 707
             :| ...||:||...|   .|...|.||       ..:|.|:|     |..|       ..|:..
  Fly   698 -VPRCDISWQKDGVPIERNDSRYFIKEKYMDASPATGDFESML-----SVLHFNMPNWPDSKFNI 756

  Fly   708 YASNAAAKVNYT---------AELQVRVAPRWRYEPMDTAI------MLGNTI--SINCEAEGYP 755
            .|.||    ||:         ..::.|......|.|.:|.:      :..:||  .:.|::...|
  Fly   757 EADNA----NYSCVSTGNIVGGSIRSRTYFGIEYAPENTTVSENIVYVQEDTIPGRVICKSRANP 817

  Fly   756 IPTITWFKGQGKGSKDFKPLSMRN-HSLLLNLATD-NDEGYYMCQATNEIGAGLKKTIRINVNEP 818
            .|:..|.         ||..::.| ::|::|.|.: ||:|.|.|.|.|:.|:.:.||: |.|...
  Fly   818 EPSYKWI---------FKNETIANGNALIINTAMNRNDDGTYTCLAYNKHGSSIAKTV-IKVQFK 872

  Fly   819 ARFEQSARNISSRRNDPVTLDCHAKGDEPI--TIGWT-QNNGRIDLNNFRFSIAEMKTEKGVDSQ 880
            .|.|...:.|    :|..||.|.|.|: ||  ...|: :.....|.|     :...|.|..|:..
  Fly   873 PRCEIERQEI----DDQDTLICTAYGN-PIEADFSWSIKTENETDEN-----LGSGKKENSVEKS 927

  Fly   881 LTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTP-SHLEIFEVGSRTVKLSWRRPFDGN 944
            ..|..:|...|..|||:|.|..|..              | ..:|:.|      :|:|.:.::.|
  Fly   928 FYILQTDYAISRTYRCVANNTVGYG--------------PFCEIEVAE------QLAWWQLWEKN 972

  Fly   945 SPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSI----------SRSYDSDLRESA 999
            :.::                 |.||       ::.:.|....|          .|..|..|.|  
  Fly   973 TLII-----------------LVAA-------ILGLLLTVIVICCIIICICRRRRRQDKYLTE-- 1011

  Fly  1000 IVAGLTPATTFLIRMQAINEIERSAYTEAI-------VLKTQEEAPTEAPSNVQVQTGGESELIV 1057
                 .|          ||.|: ||.::.:       .|.||::.....|:....:..|.:.   
  Fly  1012 -----VP----------INSIQ-SALSDQLDMSRAGRNLSTQDKCTAILPNPSSSRFIGSAP--- 1057

  Fly  1058 TWQIPPRESW---NGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSG--------WATTKATLR 1111
              :.|||  |   .|.::..:   |..|:|:    .||.......|||        .|...|.|.
  Fly  1058 --KSPPR--WPIRPGVMLHVS---SNTKENL----TVNRMTVKPNVSGNRGDMSQLSAQLSAALN 1111

  Fly  1112 GLRKYSRYAVTIRAMNSFGSGPWSA-------------AIFGTTAEGVPEAAPQNVNCTALSSQS 1163
            |.|..|  ..||....|..||...|             |...:|...|..|..:.::....|:..
  Fly  1112 GSRDNS--DGTILTEISAVSGENEASNLSILEVTNRKKATVPSTIRNVSTAEGEIISSKTHSAGH 1174

  Fly  1164 LKIS--W----------LEPPLQFHGGIIQ-------------GYKILYRPIVHQIDFPAKLEIK 1203
            :.:.  |          .....:.|.|::|             |::..:|           |:..
  Fly  1175 IALDHVWSLIFKKSDDRTRDSQRSHVGLLQTFWRGLGAKESTSGFESQHR-----------LKGI 1228

  Fly  1204 RTSNLETY---LHTLHKASNYSIRVLAYTATGDG---LASHPLFCQ------------------- 1243
            |.|...||   ..|:|..|:         |..:|   |...|..||                   
  Fly  1229 RCSGSVTYKKAKETVHSTSD---------AASNGESSLTKRPNNCQPSVSIQLQSNMEEKTSKFV 1284

  Fly  1244 -------TDDDVPDAPAAIKAAALTADSI------------------LISWLTPKNRNGIISHYT 1283
                   :..:|.:.|..:..:.....||                  :.||....|...:.||..
  Fly  1285 LKDERNNSSTEVENIPCNMVPSITRGSSIESPQRPAPSSLPLKNFLNVTSWGCSGNSTMVPSHIL 1349

  Fly  1284 VYSREAGRKGQAKTHMVRVDENGYP-VTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNT 1347
            ...:...:....:..:....|  |. :.|.....|.|:.       ||:     ||:.   ..||
  Fly  1350 ANEQIHDKSSSLREPLTEPGE--YENLPFHGLQTAPNKF-------STT-----PTNF---NNNT 1397

  Fly  1348 RAPARIAS-----FGQVVRKAVGTGLVLECLAVGNP---------------TPRARWLTRDRPVT 1392
            .| .|:|.     .|.:.:.:|  ||..:|.|..:|               ..|:::.|..||..
  Fly  1398 NA-VRVAQRPKELIGNINQPSV--GLYQDCQATHDPLLYHQKYFCDQDALNDQRSQYTTMHRPPN 1459

  Fly  1393 --------FSPFYEVTNEGNLK-IHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIV 1448
                    |.|      :.||: .|.:...:|.:||            :|.....:......|..
  Fly  1460 NVQYNQSLFKP------DSNLQDQHNLSNCISKSYT------------EYYQQHQRSEKLQMIFP 1506

  Fly  1449 QYASAD--------------------SIRVSWDAPDD---GGAPLQGYTISYHTAGESWSITELL 1490
            |.||.:                    ::| .:|..::   |..|.     :.|..|      .|.
  Fly  1507 QGASKELNSNSLCNTDHTPHSALVNINLR-KYDRTEEELLGNMPR-----ARHRKG------TLN 1559

  Fly  1491 PENNAFT---ISGLKCGNQ-----YII-----------------KMSAHNMVGSGVASEEINVWT 1530
            .||..::   :.|::..||     |.|                 |...||.:|   .:...||.|
  Fly  1560 VENKFYSLKHLGGIEVRNQDLDKDYPIGGTTSSTPSATDDSSLSKCKIHNSLG---CNRLCNVGT 1621

  Fly  1531 KGKASQA---PNANELIATNATCVNLKLSSWQNGGCSI-----------------HHFSIEHRPL 1575
            ..:..:.   |....::...|   :.:::..:...|::                 ||:..:||  
  Fly  1622 NVQPMRVYDPPGYQNMVLERA---DDQITLSKKDECNLATVQTHTHPGKDKIKNHHHWIHQHR-- 1681

  Fly  1576 GDIRWTVVTSDISNAEENRENLIFCDFLPAKWYQL---RISA-TNDAGKTTEHY--HFS---TTN 1631
                            |.::..:..||     :||   |||. .:|:|.:...|  .||   ...
  Fly  1682 ----------------EKKDEGLGSDF-----HQLEPERISIYRSDSGISNSSYESQFSKPKMAT 1725

  Fly  1632 IDGITIPPPSVFPSEN-DLMNNLINSTNPTSGDWFATLIVVVIITVSIITIALTIKHRRTLCGPI 1695
            ::..:.|....:...| .:.||:.|::|.|..:                   ..:....||    
  Fly  1726 LNSSSGPLVRKYAHRNIKVHNNVFNTSNVTESE-------------------AQLDDSSTL---- 1767

  Fly  1696 AEGYESRTLPGDYKEDHENR---RNQQVYSASPVKTVDKGNESEMYEISPYATFSVNGGRTGAPA 1757
               ::|.|:. .:...|.||   ||:  ||....|     ||.|.:::         |.::..||
  Fly  1768 ---HQSCTVQ-SFAPSHCNRPQPRNR--YSEETTK-----NECEQHQL---------GHQSLRPA 1812

  Fly  1758 KTPTRAVAAQTP--LDYTM-----QFKTFGHPEGENLNATAYPLLPSSGFGHVKSKSSWHKQRYY 1815
            .||:..::..|.  .:|.|     |..:...|..:.......|||       ||   :|:.:.|.
  Fly  1813 STPSECISLDTSSRSEYIMSTVPAQSDSVETPNEKIQMLAINPLL-------VK---NWNNESYT 1867

  Fly  1816 NT-----EDESTLSKSMTIV-------AGSQAGHSKKSNGGRSAKSSAACSGVVAGSESDTSISP 1868
            ..     :...|::.....:       .|.....|:|:    .:.||.|......||:|::| :|
  Fly  1868 GNKINKKQRRQTINNPYEHIQSHPYARPGDVCEVSRKA----QSNSSEAFKTYNYGSKSNSS-AP 1927

  Fly  1869 ST---EFSNMPTYRVPCKSSRSSDGR--------------------AVVDMFRPDSSTESNNDQG 1910
            .|   |.|.:......||.:.....|                    |.:|.|  .|....|...|
  Fly  1928 QTAAPEHSKVKNATKICKKNGIGANREHYEGMLASKHIQGSRLGSLADIDDF--PSQGPLNALVG 1990

  Fly  1911 SPA-----------PERRHNTPRHVLGMGMAMGLGGGGGGGVGGGNGPAEKRSAGQRSRKHGSAA 1964
            :||           |.|:|:| .|......|              ||..::.....:.:.|.|  
  Fly  1991 NPADCLVARRPIRLPLRKHHT-FHFQSTQTA--------------NGKLQQLRERLQLQLHES-- 2038

  Fly  1965 QQPSNQTLERRKCPGSSNSLD-SEVDA----ETAASLAASIAAMAGSGAGADL--SGGFRPPAGF 2022
                 :.:::.|.|...::|: ||..|    ....||..|.....|.....|.  .|..|...|.
  Fly  2039 -----RKVDQEKFPLVFDALELSEKHAFKPISPIPSLNNSAVQSTGEQKQVDFPKHGSVRHLKGA 2098

  Fly  2023 HDGREPGDHSDCERE 2037
            .|..:.| :|.||.|
  Fly  2099 EDDEDLG-YSFCEEE 2112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 20/96 (21%)
Ig 56..125 CDD:143165 19/88 (22%)
I-set 246..337 CDD:254352 28/107 (26%)
Ig 264..334 CDD:143165 25/81 (31%)
I-set 345..433 CDD:254352 20/95 (21%)
Ig 358..431 CDD:143165 17/80 (21%)
Ig 456..533 CDD:143165 18/88 (20%)
IGc2 553..619 CDD:197706 8/65 (12%)
I-set 634..724 CDD:254352 24/116 (21%)
ig 645..712 CDD:278476 20/84 (24%)
IG_like 734..815 CDD:214653 25/90 (28%)
Ig 745..815 CDD:299845 22/73 (30%)
I-set 820..913 CDD:254352 26/95 (27%)
Ig 838..920 CDD:299845 21/84 (25%)
FN3 917..1033 CDD:238020 22/133 (17%)
FN3 1040..1142 CDD:238020 28/125 (22%)
fn3 1150..1237 CDD:278470 18/117 (15%)
FN3 1263..1345 CDD:238020 16/100 (16%)
Ig 1350..1436 CDD:299845 22/114 (19%)
IG_like 1358..1436 CDD:214653 19/101 (19%)
FN3 1441..1530 CDD:238020 24/136 (18%)
FN3 1542..1620 CDD:238020 15/98 (15%)
nrmNP_001246890.1 Ig 44..152 CDD:299845 2/8 (25%)
Ig 176..248 CDD:299845 18/75 (24%)
Ig 277..354 CDD:299845 20/93 (22%)
IG_like 383..463 CDD:214653 24/85 (28%)
Ig 394..463 CDD:143165 23/74 (31%)
Ig_3 585..652 CDD:290638 17/83 (20%)
Ig 685..>719 CDD:299845 13/66 (20%)
IG_like 788..869 CDD:214653 25/90 (28%)
Ig <811..869 CDD:299845 21/67 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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