DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and nptnb

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_991268.1 Gene:nptnb / 403006 ZFINID:ZDB-GENE-040426-1821 Length:403 Species:Danio rerio


Alignment Length:383 Identity:87/383 - (22%)
Similarity:148/383 - (38%) Gaps:92/383 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 FLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLKC 460
            ||...::::..|..::.|..:          ..|:|:||                 .|....|.|
Zfish    12 FLVHGNVMLPYVSSQNAGFVK----------SPMSEVKL-----------------TGDAFELYC 49

  Fly   461 SASGSPPPQFAW------LLDS-QPIMDVSLHHRFAIGQFVDMSG-DVISHLNISHVRPDDGGLY 517
            ...|:|.|:..|      ..|| :.:.|.:...|.:|.   ..|| :|:|.|.||.:..:|.|:|
Zfish    50 DVVGNPVPEIQWWYADINRADSFKQLWDGARKRRVSIN---TASGANVVSVLAISRLTLEDAGIY 111

  Fly   518 KCVASN-----------SMGSVQHSARLNVYGPPYVRA-----IGPIKAVAGED----IIVHCPF 562
            :|.|||           ::..::..|.:.|...|.:.|     :.|..:...:|    |::.|..
Zfish   112 ECRASNDPRRNDMRQNPAITWIRTQATITVLQRPRINASDQEILQPKSSKTSQDPPEPIVLKCNL 176

  Fly   563 AG--YPVEQIRWEKAHQELTTS----NHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEE 621
            ..  ...::..|.|..||:::|    .|.|..          .|.....|.|.|.|:...::...
Zfish   177 TNSHSTHQETFWMKNGQEISSSRTQRKHTEFR----------LNKPRTDDSGEYMCVYTFKSAPN 231

  Fly   622 ARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKD---------DSSIPS 677
            |  :..:.|.:.|.|...|..:|.:||..|.:.|..:....|:: :|:|.         |:|...
Zfish   232 A--NASIEVKACPEIIGHKRSENKKEGENATLYCKSAGYPHPVW-TWRKKVGRDSYMDIDNSTGR 293

  Fly   678 SLQITEKKEEFYSLLVFKDISAR-HSGKYTCYASNAAAKVNYTAELQVR--VAPRWRY 732
            ...:  .:|.|..|.:. |:..| ..|:|.|.|||.....|.:..|:||  :||.|.:
Zfish   294 FFIV--NRENFTELSIL-DLDIRTDPGEYFCNASNIIGFTNSSTILRVRSHLAPLWPF 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352 6/36 (17%)
Ig 358..431 CDD:143165 5/34 (15%)
Ig 456..533 CDD:143165 25/95 (26%)
IGc2 553..619 CDD:197706 15/75 (20%)
I-set 634..724 CDD:254352 26/99 (26%)
ig 645..712 CDD:278476 19/76 (25%)
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
nptnbNP_991268.1 IGc2 42..117 CDD:197706 24/77 (31%)
IG_like 168..223 CDD:214653 13/64 (20%)
Ig 170..223 CDD:299845 13/62 (21%)
Ig 242..338 CDD:299845 26/99 (26%)
IG_like 249..338 CDD:214653 23/92 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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