DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and btl

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001014583.1 Gene:btl / 39564 FlyBaseID:FBgn0285896 Length:1052 Species:Drosophila melanogaster


Alignment Length:675 Identity:139/675 - (20%)
Similarity:234/675 - (34%) Gaps:191/675 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 CLVTNTL-NGERQR-----SDAVMLQVKELSKNLAPRTTQKPVMEIHVER---GNDVHLPCNIQG 272
            |.:..|: |..|||     .|..:..|:.::|.......|.....:.:||   ||..:..|....
  Fly    30 CYIDVTVENSPRQRHLLSDMDITLQCVRPMAKWFYEDKFQLRATLLRLERAQSGNSGNYGCLDSQ 94

  Fly   273 NPFPIFTWYRVS--------------------DSAALYPIPSS----QRVILSRTLLLIKNADER 313
            |     .||.:|                    |:.||   |.|    |.:..||:|.|::.    
  Fly    95 N-----RWYNISLVVGHKEPVGNDIASFVKLEDAPAL---PESDLFFQPLNESRSLKLLQP---- 147

  Fly   314 DAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDA----IDW 374
                                            ||:.....:||....||:....  ||    |.|
  Fly   148 --------------------------------LPKTVQRTAGGLFQLNCSPMDP--DAKGVNISW 178

  Fly   375 LHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQC--LVEN--QRASAQAMAELKLG 435
            |||      :..:..||..|: |.:.||.|..:...|.|.|.|  .||.  ||::...:..:...
  Fly   179 LHN------DTQILGGRGRIK-LKRWSLTVGQLQPEDAGSYHCELCVEQDCQRSNPTQLEVISRK 236

  Fly   436 DTVPELIYTFIEQ-NVRPGPLISLKCSASGSP-PPQFAWLL--DSQPIMDVSLHHRFAIGQFVDM 496
            .|||.|...:... ::..|..:|::|....|. .|:..||.  ::..|.|:....|......||:
  Fly   237 HTVPMLKPGYPRNTSIALGDNVSIECLLEDSALEPKITWLHKGNADNIDDLLQRLREQSQLPVDV 301

  Fly   497 SG-----DVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDI 556
            :.     |....|.:.:|..:|||.|.|:|.|.:|....::.:::|.|.....:           
  Fly   302 TRLITRMDEPQVLRLGNVLMEDGGWYICIAENQVGRTVAASYVDLYSPSDTTTV----------- 355

  Fly   557 IVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEE 621
                             :.....|.::....||..:.....::|.......|:            
  Fly   356 -----------------RTTTTTTVASPIPTASTGEDNDDDVENPAAEASGGV------------ 391

  Fly   622 ARRDMQLNVNSPPVIEPFKFPKNLQ---EGGRAQITCAVSSGDMPIY----FSWKKDDSSIPSSL 679
                      .|||..  |..|.||   .|....:.|       |:|    .:|.||...:...|
  Fly   392 ----------GPPVFR--KELKRLQHSLSGNTVNLAC-------PVYGKANITWTKDKKPLNREL 437

  Fly   680 QITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPM-----DTAI 739
            .:..:|.   ..|.|.:.::..||.|.|...||...:.:  :..|::..|.|..|:     :..:
  Fly   438 GVYVQKN---WTLRFVEATSEDSGLYNCKVCNAWGCIQF--DFSVQINDRTRSAPIIVVPQNQTV 497

  Fly   740 MLGNTISINCEAEGYPIPTITWFKG-------QGKGSKDFKPL--SMRNHSLLLNL--ATDNDEG 793
            .:..::.:.|.......||::|.:.       .|..|.:.:.|  ::.|.|::|.|  .|.:.||
  Fly   498 KVNGSLVMKCTVYSDLHPTVSWKRVVLKNASLDGLKSVEIQNLNFTVTNDSVVLTLRNVTFDQEG 562

  Fly   794 YYMCQATNEIGAGLKKTIRINVNEP 818
            :|.|.|::.:|.. ..::.:.|..|
  Fly   563 WYTCLASSGLGRS-NSSVYLRVVSP 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 20/117 (17%)
Ig 264..334 CDD:143165 15/93 (16%)
I-set 345..433 CDD:254352 28/95 (29%)
Ig 358..431 CDD:143165 24/80 (30%)
Ig 456..533 CDD:143165 22/84 (26%)
IGc2 553..619 CDD:197706 5/65 (8%)
I-set 634..724 CDD:254352 23/96 (24%)
ig 645..712 CDD:278476 17/73 (23%)
IG_like 734..815 CDD:214653 19/96 (20%)
Ig 745..815 CDD:299845 18/80 (23%)
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
btlNP_001014583.1 IG_like 149..232 CDD:214653 27/91 (30%)
IGc2 157..215 CDD:197706 21/66 (32%)
IG 247..336 CDD:214652 22/88 (25%)
Ig 258..340 CDD:143165 22/81 (27%)
I-set 394..479 CDD:254352 24/98 (24%)
IGc2 408..469 CDD:197706 17/70 (24%)
IG_like 492..583 CDD:214653 18/91 (20%)
Ig 507..583 CDD:299845 18/76 (24%)
PKc_like 700..1000 CDD:304357
TyrKc 712..996 CDD:197581
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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