DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Igdcc4

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_038937673.1 Gene:Igdcc4 / 363081 RGDID:1310919 Length:1345 Species:Rattus norvegicus


Alignment Length:1234 Identity:262/1234 - (21%)
Similarity:432/1234 - (35%) Gaps:359/1234 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   546 GPIKAVAGED--IIVHCPF---AGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGR 605
            ||::.|.|.:  :::.|..   |..|...:.|.|....:...::..|  :.:|...:...:||..
  Rat   132 GPLRVVLGPEQAVVLDCTLGAAAAGPPTTVTWSKDGDVVLERDNLHL--LPNGSLRLSSPLEPED 194

  Fly   606 D------------QGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKF---PKNLQEGGRAQITC 655
            .            :|.|:|:.....|..|   .|:.|.....:|.|..   .:.::|.|.|:..|
  Rat   195 SDDEEALSVWKVIEGSYSCLAHGPLGVVA---SQVAVVKLATLEDFSLHPESQTVEENGTARFEC 256

  Fly   656 AVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTA 720
            .......|| .:|:||..::....::.........:|   |:....:|.|.|.|:| :|:..::.
  Rat   257 HTEGLPAPI-ITWEKDQVTVTEEPRLITLPNGVLQIL---DVQDSDAGSYRCVATN-SARQRFSQ 316

  Fly   721 ELQVRVAPRWRYE------------PMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKG-SKDF 772
            |..:.||.|...|            |.:|.::.|.::.:.|.|...|.|.::|.:..||. |.|.
  Rat   317 EALLSVALRGSLEATRGQDVVIVAAPENTTVVSGQSVVLECVASADPTPFVSWVRQDGKPISTDV 381

  Fly   773 KPLSMRNHSLLLNLATDNDEGYYMCQA----TNEIGAGLKKTIRINVNEPARFEQSARNISSRRN 833
            ..|...|  ||:..|.....|.|:|:|    |.:......: :|: :..|| ..|:...:|..|.
  Rat   382 IVLGRTN--LLIASAQPRHSGVYVCRANKPRTRDFATAAAE-LRV-LAAPA-ISQAPEALSRTRA 441

  Fly   834 DPVTLDCHAKGDEPITIGWTQN------NGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSG 892
            ......|.|.|:...|:.|..:      |||:.:             :|....|.|......|||
  Rat   442 STARFVCRASGEPRPTLHWLHDGAPLRPNGRVKV-------------QGGGGSLVITQIGLQDSG 493

  Fly   893 VYRCIAENPYGRAEQIIFLAVQER---PDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQY 954
            .|:|:|||..|.|.....|||..|   |..|:.::...:.|..|.::|.||...:..::.:.:.|
  Rat   494 YYQCVAENSAGTACAAAPLAVVVREGLPSAPTRVKATPLSSSAVLVAWERPELHSEQIIGFSLHY 558

  Fly   955 QALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINE 1019
            |           .|.|.|...:...|:..:|.:.            |..|.|.|.:...:.|.::
  Rat   559 Q-----------KARGVDNVEYQFAVNNDTTELQ------------VRDLEPNTDYEFYVVAYSQ 600

  Fly  1020 IERSAYTEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTVNCSEEKQN 1084
            :..|..:...::.|.::.|:.|| .:.:.:...|::.|.|...|....||:::.|.:.....|::
  Rat   601 LGASRTSSPALVHTLDDVPSAAP-QLSLSSPNPSDIRVAWLPLPSSLSNGQVVKYKIEYGSGKED 664

  Fly  1085 INFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGV--- 1146
            ..|         ||.|.| ..|:.||..|:....|.|.|.|    |:|    |.:|..::.:   
  Rat   665 QVF---------STEVPG-NETQLTLNSLQPNKVYRVRISA----GTG----AGYGVPSQWMQHR 711

  Fly  1147 -PEA--------APQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDF------ 1196
             |.|        ||..:...| ..:||.:||..||   |...|.|||:.:|.:..:.:.      
  Rat   712 TPGAHNQSHVPFAPAELKVRA-KMESLVVSWQPPP---HPTQISGYKLYWREVGTEEEADGDRPP 772

  Fly  1197 -----------PAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGLA-----------SHP 1239
                       |.:|: |:....|  |..|.....|.::::|:....||.|           :..
  Rat   773 GGRGDQAWDVGPVRLK-KKVKQYE--LTQLVPGRLYEVKLVAFNKHEDGYAAVWKGKTEKAPTPD 834

  Fly  1240 LFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMVRVDE 1304
            |..|....:|  ||.:.|.:.::.||.:.|..|......|.:|||      |.|           
  Rat   835 LPIQRGPPLP--PAHVHAESNSSTSIWLRWKKPDFTTVKIVNYTV------RFG----------- 880

  Fly  1305 NGYPVTFESRSLAENQMYEFWVSASTSVGEG------EPTSVIAQATNTRAPARIASFGQVVRKA 1363
               |....:.||         |:..||.||.      :|.:....|..:........||.||.::
  Rat   881 ---PWGLRNASL---------VTYYTSSGEDILIGGLKPFTKYEFAVQSHGVDMDGPFGSVVERS 933

  Fly  1364 VGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGS 1428
            .                     ..|||.|                                    
  Rat   934 T---------------------LPDRPST------------------------------------ 941

  Fly  1429 DEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGGAPLQGYTISY---HTAGE-SWSITEL 1489
                       |||  .:.:...:..::|:.|..|.:....:..|.|.|   ||..| .|::  |
  Rat   942 -----------PPS--DLRLSPLTPSTVRLHWCPPTEPNGEIVEYLILYSNNHTQPEHQWTL--L 991

  Fly  1490 LPENNAFT--ISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNANELIATNAT--- 1549
            ..|.|.|:  :.||:...:|..||.|...||.|..|...:|.|    .|...::.|...:.|   
  Rat   992 TTEGNIFSAEVHGLESDTRYFFKMGARTEVGPGPFSRLQDVIT----LQETFSDSLDVHSVTGII 1052

  Fly  1550 --------------CVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIFC 1600
                          |..|:.||              ||                           
  Rat  1053 VGVCLGLLCLLACMCAGLRRSS--------------HR--------------------------- 1076

  Fly  1601 DFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINSTNPTSGDW 1664
            :.||.      :|:|..||....:        ....:.|||| |:.::| .:|:   :|...||
  Rat  1077 EALPG------LSSTATAGNPALY--------SRARLGPPSV-PAAHEL-ESLV---HPRPQDW 1121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706 13/82 (16%)
I-set 634..724 CDD:254352 20/92 (22%)
ig 645..712 CDD:278476 15/66 (23%)
IG_like 734..815 CDD:214653 23/85 (27%)
Ig 745..815 CDD:299845 20/74 (27%)
I-set 820..913 CDD:254352 25/98 (26%)
Ig 838..920 CDD:299845 26/90 (29%)
FN3 917..1033 CDD:238020 20/115 (17%)
FN3 1040..1142 CDD:238020 27/101 (27%)
fn3 1150..1237 CDD:278470 26/114 (23%)
FN3 1263..1345 CDD:238020 19/87 (22%)
Ig 1350..1436 CDD:299845 8/85 (9%)
IG_like 1358..1436 CDD:214653 6/77 (8%)
FN3 1441..1530 CDD:238020 27/94 (29%)
FN3 1542..1620 CDD:238020 13/94 (14%)
Igdcc4XP_038937673.1 Ig 131..223 CDD:416386 17/92 (18%)
Ig strand A' 135..138 CDD:409353 0/2 (0%)
Ig strand B 144..154 CDD:409353 1/9 (11%)
Ig strand C 160..165 CDD:409353 1/4 (25%)
Ig strand C' 167..169 CDD:409353 0/1 (0%)
Ig strand D 175..179 CDD:409353 1/5 (20%)
Ig strand E 182..187 CDD:409353 1/4 (25%)
Ig strand F 209..217 CDD:409353 3/7 (43%)
Ig_3 237..308 CDD:404760 16/74 (22%)
Ig strand A' 243..246 CDD:409353 0/2 (0%)
Ig strand B 252..259 CDD:409353 2/6 (33%)
Ig strand C 265..270 CDD:409353 2/5 (40%)
Ig strand C' 272..274 CDD:409353 0/1 (0%)
Ig strand D 280..284 CDD:409353 0/3 (0%)
Ig strand E 287..292 CDD:409353 0/4 (0%)
Ig strand F 300..308 CDD:409353 4/7 (57%)
Ig strand G 316..324 CDD:409353 2/7 (29%)
IG_like 342..423 CDD:214653 22/83 (27%)
Ig strand A' 342..347 CDD:409353 2/4 (50%)
Ig strand B 353..360 CDD:409353 1/6 (17%)
Ig strand C 366..371 CDD:409353 1/4 (25%)
Ig strand C' 373..375 CDD:409353 0/1 (0%)
Ig strand D 381..384 CDD:409353 0/2 (0%)
Ig strand E 387..393 CDD:409353 3/7 (43%)
Ig strand F 400..407 CDD:409353 3/6 (50%)
Ig 442..514 CDD:416386 22/84 (26%)
Ig strand B 443..451 CDD:409353 1/7 (14%)
Ig strand C 457..462 CDD:409353 2/4 (50%)
Ig strand C' 464..467 CDD:409353 0/2 (0%)
Ig strand D 472..476 CDD:409353 1/16 (6%)
Ig strand E 478..485 CDD:409353 1/6 (17%)
Ig strand F 494..501 CDD:409353 3/6 (50%)
Ig strand G 505..514 CDD:409353 2/8 (25%)
fn3 522..607 CDD:394996 19/107 (18%)
FN3 619..712 CDD:238020 28/111 (25%)
fn3 724..818 CDD:394996 23/100 (23%)
FN3 842..934 CDD:238020 28/122 (23%)
FN3 942..1034 CDD:238020 28/95 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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