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Protein Alignment Dscam3 and Cd300le

DIOPT Version :9

Sequence 1:	NP_996226.2	Gene:	Dscam3 / 42103	FlyBaseID:	FBgn0261046	Length:	2087	Species:	Drosophila melanogaster
Sequence 2:	NP_001189392.1	Gene:	Cd300le / 360655	RGDID:	1305426	Length:	225	Species:	Rattus norvegicus

Alignment Length:	280	Identity:	51/280 - (18%)
Similarity:	94/280 - (33%)	Gaps:	93/280 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly  1435 VIAMKPPSAPQ---------IIVQ--YASADSIRVSWDAPDDGGAPLQGYTISYHTAGESWSITE 1488
            :.|..|.:.|:         :.||  |||      .|          :.|. .|...|..|...|
  Rat    16 ITAQDPVTGPEEVSGHEQGSLTVQCRYAS------GW----------EDYR-KYWCRGSGWRSCE 63

  Fly  1489 LLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNANELIATNATCVNL 1553
            :|.|.:                           |||.:.  .|.:.|...:....|.| .|..:|
  Rat    64 ILVETD---------------------------ASERLA--KKNRVSIRDDQTNFIFT-VTMEDL 98

  Fly  1554 KLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIFCDFLPAKWYQLRISATNDA 1618
            ::|......|.|  ..:...|:.::|.::..:..|:.....|:              ..:.|.::
  Rat    99 RMSDADVYWCGI--TKVGRDPMFEVRVSIDPAPESSTTRTTES--------------STTITTES 147

  Fly  1619 GKTTEHYHFSTTNIDGITIPPPSVFPSEND-LMNN------LINSTNPTSGDWFATLIVVVI-IT 1675
            ..|     ..||....:|..||::..:.:: |:.|      |::|.:      |..|..||: :.
  Rat   148 STT-----IMTTMPTVLTSIPPNMENAGHERLIQNSPFIWPLLSSVS------FQLLAFVVLPLL 201

  Fly  1676 VSIITIALTIKHRRTLCGPI 1695
            ||:::..|.:...:...|.:
  Rat   202 VSMLSAILWVNRPQRRPGKV 221

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.