DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Sdk2

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_006247755.1 Gene:Sdk2 / 360652 RGDID:1310397 Length:2175 Species:Rattus norvegicus


Alignment Length:1888 Identity:416/1888 - (22%)
Similarity:666/1888 - (35%) Gaps:510/1888 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 QVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDR 412
            :.|:...|......|...||......||||      |..||      ||..:...::.::.|...
  Rat    37 RTQVHLEGNRLVLTCMAEGSWPLEFKWLHN------NRELT------RFSLEYRYMITSLDRTHA 89

  Fly   413 GVYQCLVENQRASAQAMAELKLGDTVPELIY--TFIE----QNVRPGPLISLKC-SASGSPPPQF 470
            |.|:|:|.|:      |..|....|..::.|  :|.|    |:|..|....:|. ..|..|.||.
  Rat    90 GFYRCIVRNR------MGALLQRQTEVQVAYMGSFEEGEKHQSVSHGEAAVIKAPRISSFPRPQV 148

  Fly   471 AWLLDSQPI-----MDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQH 530
            .|..|.:.|     :.::|.:...|               :|.|.||.|..|....::..|..:.
  Rat   149 TWFRDGRKIPPSSRIAITLENTLVI---------------LSTVAPDAGRYYVQAVNDKNGDNKT 198

  Fly   531 SARL-----NVYGP-----PYVRAIGPIK---AVAG-EDIIVHCPFAGYPVEQIR--WEKAHQEL 579
            |..:     ||.||     |.:  |.|.|   .||| .::.:.|.....|:.::.  |:|....|
  Rat   199 SQPITLAVENVGGPADPIAPTI--IIPPKNTSVVAGTSEVTMECVANARPLIKLHIVWKKDGALL 261

  Fly   580 TTSNHYELASVAD-GGQLVIKNVEPGRDQGIYTC--IVRSRAGEEARRDMQLNVNSPP--VIEPF 639
            :.       .::| ..:|.|.|.... |.|.|.|  ::||.:.....|...|:|..||  |.||.
  Rat   262 SN-------GISDYNRRLTITNPMVS-DAGYYECEAMLRSSSVAPVTRGAYLSVLEPPQFVREPE 318

  Fly   640 KFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGK 704
            :......| ....|.|. :.|..|...:|.||.:.:... ::|..|:.....|....:....:|.
  Rat   319 RHITAEME-KVVDIPCR-AKGVPPPSITWYKDAALVEVG-KLTRFKQRSDGGLQISGLLPDDTGM 380

  Fly   705 YTCYASNAAAKVNYTAELQV-RVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQ--- 765
            ..|:|.|||.:...:..|.| .:||.....|:|:.::.|.::.:.||..|.|.|.|||.||:   
  Rat   381 VQCFAHNAAGEAQTSTYLAVTSIAPNITRGPLDSTVIDGMSVVLACETSGAPRPAITWQKGERIL 445

  Fly   766 GKGSKDFKPLS-MRNHSLLLNLATDNDEGYYMCQATN-----EIGAGLKKTIRINVNEPARFEQS 824
            ..||......: :.:.|||::....:|.|.|.|.|||     |..|.|....|..:.:|.: :||
  Rat   446 ASGSVQLPRFTLLESGSLLISPTHISDAGTYTCLATNSRGVDEASADLVVWARTRITKPPQ-DQS 509

  Fly   825 ARNISSRRNDPVTLDCHAKGDEPITIGW----------TQNNGRIDLNNFRFSIAEMKTEKGVDS 879
            .     .:....::.|....|..:|:.:          .:.|.||.|:.              :.
  Rat   510 V-----IKGTQASMVCGVTHDPRVTVRYVWEKDGATLAVETNPRIRLDR--------------NG 555

  Fly   880 QLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSH----LEIFEVGSRTVKLSWRRP 940
            .|.|..:...|.|.|.|...:..|...:...|.|::.|..|.|    |...|  .|.:.|:|.:|
  Rat   556 SLHISQTWSGDIGTYTCRVLSAGGNDSRNAHLRVRQLPHAPEHPVATLSTME--RRAINLTWAKP 618

  Fly   941 FDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLT 1005
            ||||||::.|:::            ::.....|...:.:|...:||:            :|.||.
  Rat   619 FDGNSPLMRYILE------------MSENNAPWTILLASVDPEATSV------------MVKGLV 659

  Fly  1006 PATTFLIRMQAINEIERSAY---TEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESW 1067
            ||.::..|:.|:|::.:..:   ||.:.|  .||.||..|.||.........:::.||.||....
  Rat   660 PARSYQFRLCAVNDVGKGQFSKDTERVSL--PEEPPTAPPQNVIASGRTNQSIMIQWQPPPESHQ 722

  Fly  1068 NGELIGYTVN-C------SEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRA 1125
            ||.|.||.:. |      ..:.:||....|.|..|:..|:               ::.|.:.:.|
  Rat   723 NGILKGYIIRYCLAGLPVGYQFKNITDADVNNLLLEDLII---------------WTNYEIEVAA 772

  Fly  1126 MNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKIL-YRP 1189
            .||.|.|.:|:.:...|.:|||...|.||:..|.:|.:::.:|..|..||..||.||||:: :.|
  Rat   773 YNSAGLGVYSSKVTEWTLQGVPTVPPGNVHAEATNSTAIRFTWNAPSPQFINGINQGYKLIAWEP 837

  Fly  1190 IVHQIDFPAKLEIKRTS---NLETYLHT-----LHKASNYSIRVLAYTATGDGLASHPLFCQTDD 1246
            ...:       |:...:   |.:..:|.     |.|.:.|...||.:|..|||..|.|...:|.:
  Rat   838 TQEE-------EVTMVTARPNFQDSIHVGFVSGLKKFTEYFTSVLCFTTPGDGPRSSPQLVRTHE 895

  Fly  1247 DVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMVRVDENGYP-VT 1310
            |||.....:....:...|:.:||..|..:|||::.|.:...|..|.....||.:       | ||
  Rat   896 DVPGPVGHLSFNDILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYL-------PNVT 953

  Fly  1311 FESR--SLAENQMYEFWVSASTS------------------------------------------ 1331
            .|.|  .|.....|...|:|.||                                          
  Rat   954 LEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPELPGAPTNLGISNIGPRSVTLQFRP 1018

  Fly  1332 -------------------VGEGEPTSVIAQATN------------------------------- 1346
                               :||||...:|.|.:|                               
  Rat  1019 GYDGKTSISRWVVEAQVGMIGEGEEWLLIYQLSNEPDARSMEVPDLNPFTYYSFRMRQVNIVGTS 1083

  Fly  1347 -----------TRAPARIASFGQVVRKAVGTGLVLECLAV------GNP---------------- 1378
                       .:||..:|.....:|.|..|.|.|..:.:      |||                
  Rat  1084 PPSQPSRKIQTLQAPPDMAPANVTLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSRSDGHG 1148

  Fly  1379 -----TPRAR------------WL------------------------TRDRPVTFSP------- 1395
                 |.:.|            |.                        ||:...:..|       
  Rat  1149 KTLSHTVQDRVEREYTIEDLEEWTEYRVQVQAFNAIGSGPWSQAVVGRTRESVPSSGPTNVSALA 1213

  Fly  1396 ----------------------------FYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGSDEIQ 1432
                                        :.|..::...:...|||:.|.:...|....:...|:|
  Rat  1214 TTSSSMLVRWSEIPEADRNGLVLGYKVRYKEKDSDSQARFWLVEGNSSRSAQLTGLGKYVLYEVQ 1278

  Fly  1433 ---YQVIAMKPPSAPQIIVQ---------------YASADSIRVSWDAPDDGGAPLQGYTISYH- 1478
               :..|....||.|.|:.:               .....|:|:.|..|......:..|.|::. 
  Rat  1279 VLAFTRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPATPNGIILAYQITHRL 1343

  Fly  1479 --TAGESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNAN 1541
              |...:.::..|.|....:..:|||..:.|:.:::|....|.|.|:|.:.|.|:.:....|.:.
  Rat  1344 NATTANTATVEVLAPSARQYMATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRDRPQPPSK 1408

  Fly  1542 ELIATNATCVNLKLSSWQNG--GCS-IHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIFCDFL 1603
            .::..........|.||:.|  |.| :.:::|:.|.|...||.:.::.:|:   |..........
  Rat  1409 PVVQQEDVKARSVLLSWEPGSDGLSPVRYYTIQTRELPSGRWALHSASVSH---NASAFTVDRLK 1470

  Fly  1604 PAKWYQLRISATNDAGKT--TEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINSTNPTSGDWFA 1666
            |...|:.|:.||||.|.:  :|... |.|.:.......|::.........:::....|.|.|   
  Rat  1471 PFTSYKFRVKATNDIGDSEFSEESE-SLTTLQAAPDEAPTILSVTPHTTTSVLIRWQPPSED--- 1531

  Fly  1667 TLIVVVIITVSIITIALTIKHRRTLCGPIAEGYESRTLPGDYKEDHENRRNQQVYS----ASPVK 1727
                    .::.|.:...|::|..|    .||....||.|......:......:||    ..|..
  Rat  1532 --------KINGILLGFRIRYRELL----YEGLRGFTLRGINNPGAKWAELTSLYSMRNLTRPSL 1584

  Fly  1728 T---VDKGNESEMYEISPYATFSVNGGRTGAPAK------TPTRA-------VAAQTPLDYTMQF 1776
            |   :|...:...|||......:|..|....|.:      .||.|       .|..|.||.|.:.
  Rat  1585 TQYELDNLTKHRRYEIRMSVYNAVGEGPLSPPQEVFVGEAVPTAAPQNVAIHSATATQLDVTWEP 1649

  Fly  1777 KTFGHPEGENLNATAYPLLPSSGFGHVKSKSSWHKQRYYNTEDESTL--------SKSMT----- 1828
            ....:..|:......|               .|..||...||...||        .|::|     
  Rat  1650 PPLDNQNGDIQGYKIY---------------FWEVQRRNLTERVKTLFLAENSVKLKNLTGYTAY 1699

  Fly  1829 ---IVAGSQAGHSKKS--NGGRSAKSSAACSGVVAGSE-SDTSISPS---TEFSNMPT--YRV-- 1880
               :.|.:.||...:|  ..|::.:::.:..|.|..|| :.||::.|   .:|.|.|.  ||:  
  Rat  1700 MVSVAAFNAAGDGPRSTPTQGQTQQAAPSAPGSVKFSELTTTSVNVSWDAPQFPNGPLEGYRLVY 1764

  Fly  1881 -PC 1882
             ||
  Rat  1765 EPC 1767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352 21/84 (25%)
Ig 358..431 CDD:143165 19/72 (26%)
Ig 456..533 CDD:143165 18/82 (22%)
IGc2 553..619 CDD:197706 16/71 (23%)
I-set 634..724 CDD:254352 22/91 (24%)
ig 645..712 CDD:278476 14/66 (21%)
IG_like 734..815 CDD:214653 29/89 (33%)
Ig 745..815 CDD:299845 26/78 (33%)
I-set 820..913 CDD:254352 17/102 (17%)
Ig 838..920 CDD:299845 17/91 (19%)
FN3 917..1033 CDD:238020 31/122 (25%)
FN3 1040..1142 CDD:238020 26/108 (24%)
fn3 1150..1237 CDD:278470 28/95 (29%)
FN3 1263..1345 CDD:238020 29/145 (20%)
Ig 1350..1436 CDD:299845 24/186 (13%)
IG_like 1358..1436 CDD:214653 22/178 (12%)
FN3 1441..1530 CDD:238020 23/106 (22%)
FN3 1542..1620 CDD:238020 20/80 (25%)
Sdk2XP_006247755.1 IG_like 43..112 CDD:214653 22/86 (26%)
IGc2 43..101 CDD:197706 19/75 (25%)
IG_like 123..206 CDD:214653 21/97 (22%)
Ig 135..191 CDD:299845 16/70 (23%)
IG_like 225..307 CDD:214653 21/89 (24%)
IGc2 236..289 CDD:197706 13/60 (22%)
I-set 311..400 CDD:254352 22/91 (24%)
Ig 329..397 CDD:143165 16/69 (23%)
I-set 405..495 CDD:254352 29/89 (33%)
Ig 419..495 CDD:299845 26/75 (35%)
Ig 505..589 CDD:299845 17/103 (17%)
IG_like 505..589 CDD:214653 17/103 (17%)
FN3 593..684 CDD:238020 28/116 (24%)
FN3 696..789 CDD:238020 26/107 (24%)
FN3 797..893 CDD:238020 30/102 (29%)
FN3 898..986 CDD:238020 24/94 (26%)
FN3 996..1090 CDD:238020 7/93 (8%)
FN3 1102..1197 CDD:238020 12/94 (13%)
FN3 1204..1293 CDD:238020 12/88 (14%)
FN3 1304..1397 CDD:238020 19/92 (21%)
FN3 1403..1487 CDD:238020 21/86 (24%)
FN3 1506..1619 CDD:238020 24/127 (19%)
FN3 1629..1722 CDD:238020 22/107 (21%)
FN3 1727..1808 CDD:238020 14/41 (34%)
FN3 1840..1919 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.