DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Dscam1

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:2206 Identity:702/2206 - (31%)
Similarity:1061/2206 - (48%) Gaps:352/2206 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LEKALLLGALLLAVLATPLLAT----SGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVT 71
            |:..:|..|:.|....:..||.    :..:.|.||.||..|:.|.|.|||::.|.|.|:|.|.:.
  Fly     8 LKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEII 72

  Fly    72 WVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVV 136
            |:..||:....|||||:||.:|.|.||||.|:.||.:||...|.|.|.|:.|:::||:|.|.|||
  Fly    73 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137

  Fly   137 RRQFHVHVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDL 201
            .:.:...:....|..||||::||.||.:|..:|.|.|||..|:......::..|:|:|| .||:|
  Fly   138 SQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEYDGKYLVL-PSGEL 201

  Fly   202 YVRSVRSEDGLMKFSCLVTNTLNGERQRSD-----AVMLQVKELSKNLAPRTTQKPVMEIHVERG 261
            ::|.|..|||...:.|...:.|.||.:.|.     .:...|..:|..|:....|:.:....|.:.
  Fly   202 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKM 266

  Fly   262 NDVHLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTL------LLIKNADERDAGKWIC 320
            ..|.|.|..|..|.|.|.||:..:...     ..|.|:|:..:      |:||:|...|:||::|
  Fly   267 GSVTLMCPAQAYPVPFFRWYKFIEGTT-----RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 326

  Fly   321 QASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANN 385
            ..:|..|.:.:|..|:|.:.:|..|.|..|.|:.|..|.|.|..||:.|..:.|:.:||.:    
  Fly   327 VVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---- 387

  Fly   386 ALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTV--PELIYTFIEQ 448
                |.      |:..|.:::|.:.|:|:|||.|.|.:.||:|.||||||...  |.:...|.|:
  Fly   388 ----GH------SEPVLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEE 442

  Fly   449 NVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDD 513
            .:.|||.:.|||.|.|:|.|:.:|.||.:.|.:   :.|:.:||:|.::|||:|:|||:.|..:|
  Fly   443 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN---NDRYQVGQYVTVNGDVVSYLNITSVHAND 504

  Fly   514 GGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQE 578
            ||||||:|.:.:|..:|||:|||||.||:|.:.....||||.:||.||.||||::.|.||:.::.
  Fly   505 GGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRA 569

  Fly   579 LTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPK 643
            |..:...:   |...|.|:|:|||...||..|||:.:::.|..||..:::.|...|.|.||.:..
  Fly   570 LPINRKQK---VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYED 631

  Fly   644 NLQEGGRAQITCAVSSGDMPIYFSWKKDDSS-------IPSSLQITEKKEEFYSLLVFKDISARH 701
            .:..|....:.|.:..||.||...|..:.|:       :...:: |.:..|..|::.....|..|
  Fly   632 LINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMR-TNRISEKTSMISIPSASPAH 695

  Fly   702 SGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQG 766
            :|:.||.|||.|....|:.:|.|.|.|||..||.|.|...|:...:.|:|:|:|.|.:||.|..|
  Fly   696 TGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 760

  Fly   767 KGSKDFKPLSMRNHSLLL--NLATDN----DEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSA 825
            ....::|.|...::..:.  .|..||    :||||:|:|.|.||:||...|.|:|..|..|.:..
  Fly   761 DTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKL 825

  Fly   826 RNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRID-LNNFRFSIAEMKTEKGVDSQLTIGHSDRH 889
            ||.::||.:|..|.|.|||::||.|.|..||.|:| .|:.|::|.|.....||.|.|:|..::|.
  Fly   826 RNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERS 890

  Fly   890 DSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQY 954
            ||.::.|:|.|.:|..:..|.:.|||.|:.|..|::.:...|:|:|||.:|:|||||:..|::::
  Fly   891 DSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEF 955

  Fly   955 QALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINE 1019
            :     :|..|       |: .:..|.:|..:          ..|.|..|:||||:.||:.|.|.
  Fly   956 K-----RSRAS-------WS-EIDRVIVPGHT----------TEAQVQKLSPATTYNIRIVAENA 997

  Fly  1020 IERSAYTEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTV-------N 1077
            |..|..:||:.:.|.||||:..|.|::|:...::.:.|||:.|||..||||::||.|       |
  Fly   998 IGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTN 1062

  Fly  1078 CSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTT 1142
            .|...:.||||:.....           ....|:.||.|::|:|.|:|.|..|:||.|......|
  Fly  1063 SSYVFETINFITEEGKE-----------HNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFT 1116

  Fly  1143 AEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKLEIKRTSN 1207
            |||.|...|.:..||.|:||::::.|:.|||:...|:|:.||::|.|.....| ..|...|:|::
  Fly  1117 AEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYD-ETKRHYKKTAS 1180

  Fly  1208 LETYLHTLHKASNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTP 1272
            .:|.||.|.|.:||:::|||.||.|||:.|.|:.|||:.|||:||..:||..:...:||:||..|
  Fly  1181 SDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPP 1245

  Fly  1273 KNRNGIISHYTVYSREAGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEP 1337
            ...||||:.|||||:..|.:.:.||..|    ..|.::||:..|.:|:.|||||:|||::|||:.
  Fly  1246 AQPNGIITQYTVYSKAEGAETETKTQKV----PHYQMSFEATELEKNKPYEFWVTASTTIGEGQQ 1306

  Fly  1338 TSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEVTNE 1402
            :..|....:.:.||:||||.............:.|||||.|.|...|..:....:.:....|..:
  Fly  1307 SKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPD 1371

  Fly  1403 GNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGG 1467
            |:|.|..|....:|:|:|.|.|....|.|.:::|.:.||.:|.:.:...:.|::.|.....:...
  Fly  1372 GSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDT 1436

  Fly  1468 APLQGYTISYHTAGESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKG 1532
            |||.|||:.|......|..:|:..::....|.||.||::|.:..:..|.:|:|.||:.:|..|||
  Fly  1437 APLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKG 1501

  Fly  1533 KASQAPNANELIATNATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENL 1597
            :..:.|.....|..::..|:|...:|::|||.:.||.:|.:....|.|    :.|||..:...|.
  Fly  1502 QKPKLPEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEW----NQISNNVKPDNNY 1562

  Fly  1598 IFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPP----------------PSVFPSE 1646
            :..|..||.||.|||:|.|.||.|...|.|:|..:.|.||.|                |:..|..
  Fly  1563 VVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEW 1627

  Fly  1647 NDLMNNLINSTNPTSGDWFATLI-VVVIITVSIITIALTIKHRRT------------------LC 1692
            .||             ::...|| .||::.|.|..:.:.:..||.                  ..
  Fly  1628 LDL-------------NFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTM 1679

  Fly  1693 GPIAE------------GY---ESRTLP-----------------GDYKEDH---ENRRNQQVY- 1721
            ||.|.            ||   .:|.||                 |..:.:|   :.|||..:| 
  Fly  1680 GPGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGRGGLRSNHSTWDPRRNPNLYE 1744

  Fly  1722 --SASPVKTVDK------GNESEMY-------EISPYATFSVNGGRTGAPAKTPTRAVAAQTPLD 1771
              .|.||.....      ||....|       ||.|||||.:.|.|   ....||:|        
  Fly  1745 ELKAPPVPMHGNHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFR---EEMDPTKA-------- 1798

  Fly  1772 YTMQFKTFGHPEGENLNATAYP-----LLPSSGFGHVKSKSSWHKQRYYNTEDESTLSKSMTIVA 1831
              |.|:||.|..|   :|...|     :||....|||.|:|.               |:||....
  Fly  1799 --MNFQTFPHQNG---HAGPVPGHAGTMLPPGHPGHVHSRSG---------------SQSMPRAN 1843

  Fly  1832 GSQAGHSKKSNGGRSAKSSAACSGVVAGSESDTSISPSTEFSNMPTYRVPCKSSRSSDGRAVVDM 1896
            ..|   .|.|.||:|:..:.|                       |.|..|...:..       |.
  Fly  1844 RYQ---RKNSQGGQSSIYTPA-----------------------PEYDDPANCAEE-------DQ 1875

  Fly  1897 FRPDSSTESNNDQGS----PAPERRHNTPRHVLGMGMAMGLGGGGGGGVG----GGNGPAEKRSA 1953
            :|  ..|..|:..||    |.||  ::.|.:........|...||..|..    |..|...:||.
  Fly  1876 YR--RYTRVNSQGGSLYSGPGPE--YDDPANCAPEEDQYGSQYGGPYGQPYDHYGSRGSMGRRSI 1936

  Fly  1954 GQRSRKHGSAAQQPSNQTLERRKCPGSSNSLDSEVDAETAASLAASIAAMAGSGAGADLSGGFRP 2018
            |        :|:.|.|.:.|....|..::.:.:                                
  Fly  1937 G--------SARNPGNGSPEPPPPPPRNHDMSN-------------------------------- 1961

  Fly  2019 PAGFHDGREPGDHSDCE--------------------REQRALDLEVQRVME--STGDAQL 2057
             :.|:|.:|..:.|:.|                    ::||..: |:::::|  .||..||
  Fly  1962 -SSFNDSKESNEISEAECDRDHGPRGNYGAVKRSPQPKDQRTTE-EMRKLIERNETGPKQL 2020

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 35/76 (46%)
Ig 56..125 CDD:143165 32/68 (47%)
I-set 246..337 CDD:254352 26/96 (27%)
Ig 264..334 CDD:143165 23/75 (31%)
I-set 345..433 CDD:254352 30/87 (34%)
Ig 358..431 CDD:143165 23/72 (32%)
Ig 456..533 CDD:143165 34/76 (45%)
IGc2 553..619 CDD:197706 26/65 (40%)
I-set 634..724 CDD:254352 26/96 (27%)
ig 645..712 CDD:278476 18/73 (25%)
IG_like 734..815 CDD:214653 31/86 (36%)
Ig 745..815 CDD:299845 27/75 (36%)
I-set 820..913 CDD:254352 36/93 (39%)
Ig 838..920 CDD:299845 34/82 (41%)
FN3 917..1033 CDD:238020 35/115 (30%)
FN3 1040..1142 CDD:238020 35/108 (32%)
fn3 1150..1237 CDD:278470 35/86 (41%)
FN3 1263..1345 CDD:238020 35/81 (43%)
Ig 1350..1436 CDD:299845 26/85 (31%)
IG_like 1358..1436 CDD:214653 20/77 (26%)
FN3 1441..1530 CDD:238020 25/88 (28%)
FN3 1542..1620 CDD:238020 27/77 (35%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 43/91 (47%)
IG 57..133 CDD:214652 35/75 (47%)
IG_like 267..343 CDD:214653 24/80 (30%)
Ig 269..340 CDD:143165 23/75 (31%)
IG_like 353..425 CDD:214653 29/85 (34%)
IGc2 361..413 CDD:197706 20/65 (31%)
I-set 433..527 CDD:254352 42/96 (44%)
IGc2 446..517 CDD:197706 34/73 (47%)
I-set 533..618 CDD:254352 32/87 (37%)
IGc2 544..607 CDD:197706 26/65 (40%)
Ig 641..714 CDD:143165 20/73 (27%)
IGc2 735..804 CDD:197706 22/68 (32%)
I-set 819..914 CDD:254352 36/94 (38%)
Ig 833..921 CDD:299845 35/87 (40%)
FN3 918..1011 CDD:238020 35/115 (30%)
FN3 1018..1116 CDD:238020 35/108 (32%)
FN3 1124..1217 CDD:238020 38/93 (41%)
FN3 1222..1312 CDD:238020 40/93 (43%)
Ig 1339..1406 CDD:299845 20/66 (30%)
FN3 1409..1499 CDD:238020 26/89 (29%)
FN3 1504..1584 CDD:238020 27/83 (33%)
Dscam_C 1890..2008 CDD:289151 26/161 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.720

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