DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and ihog

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_609085.1 Gene:ihog / 33972 FlyBaseID:FBgn0031872 Length:886 Species:Drosophila melanogaster


Alignment Length:604 Identity:127/604 - (21%)
Similarity:230/604 - (38%) Gaps:134/604 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   538 GPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQE----------LTT----SNHYELA 588
            |...:||...:.|..|:::::.|..:..| |:..|  :|:.          |.|    :|..:.|
  Fly    52 GVRILRAPESLVAPLGDEVVLECETSLQP-ERFEW--SHRSSRSPGAGFKYLKTGTAKANVSQEA 113

  Fly   589 SVADGGQLVIKNVEPGRDQGIYTC-------IVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQ 646
            :::....||..:.     .|.|.|       :|.|...       :|.:.|..:::..:....||
  Fly   114 AISRLRVLVRPDT-----LGEYRCVGWFGPLVVTSTIA-------RLELASTSLVDAQESESPLQ 166

  Fly   647 EGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQI----TEKKEEFYSL---LVFKDISARHSGK 704
                    ..||:|:..::...::..|:..:|...    .|.|.||...   |...::|:..||.
  Fly   167 --------WRVSAGNSVLWSCGQQVQSNPSASWSYYRNGVEIKPEFIGTNGNLFLSNVSSESSGS 223

  Fly   705 YTCYASNAAA--KVNYTAELQVRVAPRWRYE------------PMDTAIMLGNTISINCEAEGYP 755
            |:|.|:|.|:  ::.....||::|.|..|.|            ..:..|..|:::.:.|...|.|
  Fly   224 YSCQATNPASGERIQLPGSLQLQVTPEQRSESKSPHLLRGQPSSQEITIREGSSLLLLCPGVGSP 288

  Fly   756 IPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPAR 820
            .||:.|......|:...|...:..|:|.::....||.|.|:|...|.:...|:..|:::|.:|.:
  Fly   289 PPTVVWSSPDVVGAVKNKRSKVFGHALEISNTRVNDAGTYICFQDNGVRPALEHYIKVHVEQPPQ 353

  Fly   821 FEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGH 885
            ..:......:...|.:.|:|.|.|.....|.|        |.|...||.:.:.|  :.:...|.|
  Fly   354 IVRPPWADLTNEGDRLKLECKATGVPTPEIYW--------LLNGHSSIDDSEAE--LSNNFLILH 408

  Fly   886 S--DRHDSGVYRCIAENPYGRAEQIIFLAV--------------------------QERPDTPSH 922
            |  .|| :|..:|.|.|..|.......|.|                          |..|.||.:
  Fly   409 SVLKRH-AGYVQCFARNRLGEHSAGTLLQVNPKQIQEPRESGGTHRPKPNQGSRQKQMYPPTPPN 472

  Fly   923 LEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLP---- 983
              :..:...:|.|.|..|.:...|::.:.|||:.:            |...|....|.::|    
  Fly   473 --VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMV------------GKRKNWQTTNDNIPYGKP 523

  Fly   984 --STSISRSYDSDLRESAIVAGLTPATTFLIRMQAI--NEIERSAYTEAIVLKTQEEA--PTEAP 1042
              ::.:.:|:      :|.|..|.|..|:..|:.|:  |...:.:.|.|........|  |...|
  Fly   524 KWNSELGKSF------TASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVP 582

  Fly  1043 SNVQVQTGGESELIVTWQI 1061
            ..::::...|:.:::.|.:
  Fly   583 ELLEIEEYSETAVVLHWSL 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706 17/86 (20%)
I-set 634..724 CDD:254352 21/98 (21%)
ig 645..712 CDD:278476 18/73 (25%)
IG_like 734..815 CDD:214653 20/80 (25%)
Ig 745..815 CDD:299845 18/69 (26%)
I-set 820..913 CDD:254352 23/94 (24%)
Ig 838..920 CDD:299845 25/109 (23%)
FN3 917..1033 CDD:238020 26/123 (21%)
FN3 1040..1142 CDD:238020 3/22 (14%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
ihogNP_609085.1 IG_like 59..145 CDD:214653 18/93 (19%)
ig 265..330 CDD:278476 16/64 (25%)
IG_like 267..348 CDD:214653 20/80 (25%)
Ig 314..>377 CDD:299845 15/62 (24%)
IG_like 364..437 CDD:214653 23/83 (28%)
IGc2 365..427 CDD:197706 21/72 (29%)
FN3 467..565 CDD:238020 24/117 (21%)
fn3 580..655 CDD:278470 3/22 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452273
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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