DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and CG33543

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001014458.3 Gene:CG33543 / 3346207 FlyBaseID:FBgn0053543 Length:468 Species:Drosophila melanogaster


Alignment Length:264 Identity:68/264 - (25%)
Similarity:111/264 - (42%) Gaps:47/264 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   305 LLIKNADERDAGKWICQAS-NQFGEQRIEI--------RLSVNSYVSVHILPQVQIVNSGGTANF 360
            |:.::....|.|.|.|:.: |:.|.:.:.:        .|.||..:|.....|||.|..|..|..
  Fly   107 LVFEHIALEDRGNWTCEVNGNRNGNRNVNVEREFLASFELLVNQKISFGKTEQVQSVREGRDAMV 171

  Fly   361 NCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQC----LVEN 421
            ||...|.....:.||:||:.:...|:....|     || :.|.::||.:.|.|.|.|    :...
  Fly   172 NCFVEGMPAPEVSWLYNGEYINTVNSTKHNR-----LS-NGLYIRNVSQADAGEYTCRAMRITPT 230

  Fly   422 QRASAQAMAELKL--------GDTVPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQP 478
            ...|.|....|::        .:|:| :.|.::      |..::|.|.|.|.|||.|.||.:::.
  Fly   231 FSDSDQITILLRIQHKPHWFFNETLP-VQYAYV------GGAVNLSCDAMGEPPPSFTWLHNNKG 288

  Fly   479 IMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVR 543
            |  |..:||..:       .|..:.|.:........|.|||..:|.:|.::...:|.    |..:
  Fly   289 I--VGFNHRIFV-------ADYGATLQLQMKNASQFGDYKCKVANPLGMLERVIKLR----PGPK 340

  Fly   544 AIGP 547
            .:||
  Fly   341 PLGP 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 8/40 (20%)
Ig 264..334 CDD:143165 7/37 (19%)
I-set 345..433 CDD:254352 26/91 (29%)
Ig 358..431 CDD:143165 21/76 (28%)
Ig 456..533 CDD:143165 22/76 (29%)
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
CG33543NP_001014458.3 IGc2 165..224 CDD:197706 20/64 (31%)
IG_like 256..336 CDD:214653 25/95 (26%)
IGc2 263..327 CDD:197706 22/72 (31%)
FN3 341..445 CDD:238020 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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