DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Nrcam

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_006516011.1 Gene:Nrcam / 319504 MGIID:104750 Length:1308 Species:Mus musculus


Alignment Length:1418 Identity:313/1418 - (22%)
Similarity:527/1418 - (37%) Gaps:365/1418 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 LMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRT-TQKPVMEIHVERGNDVHLPCNIQGNPF 275
            |:.|.|.:.:.|:        |.|..|.|...:.|.| ||:...:..::...::.:.|..:|.|.
Mouse    19 LILFLCQMISALD--------VPLDPKLLHDLVQPPTITQQSPKDYIIDPRENIVIQCEAKGKPP 75

  Fly   276 PIFTWYR------VSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFG---EQRI 331
            |.|:|.|      :.....:...|.|..::::   ::.:...|...|.:.|.|.|:.|   ...|
Mouse    76 PSFSWTRNGTHFDIDKDPLVTMKPGSGTLVIN---IMSEGKAETYEGVYQCTARNERGAAVSNNI 137

  Fly   332 EIRLSVNSYVSVHILPQVQIVNSGGTANFNC-TTTGSAIDAIDWLHNG-KPLQANNALTTGRDNI 394
            .:|.|.:...:...|..: ::.:|.:....| ...|.....|.|:.|. :.|..:..::.|.:..
Mouse   138 VVRPSRSPLWTKERLEPI-VLQNGQSLVLPCRPPIGLPPAIIFWMDNSFQRLPQSERVSQGLNGD 201

  Fly   395 RFLSKSSLLVQNVGRRDRGVY------QCLVENQRASAQAMAELKLGDTV--------------- 438
            .:.  |::|.::. |.|...|      |.:.:.|..|.:.::..:|.||:               
Mouse   202 LYF--SNVLPEDT-REDYICYARFNHTQTIQQKQPISLKVISVDELNDTIAANLSDTEFYGAKSS 263

  Fly   439 PELIYTFI--------EQNVRPGPLISLKCSASGSPPPQFAWLL-DSQPIMDVSLHHRFAIGQFV 494
            .|...||:        ::.:| |.::||:|.|.|.|.|...|:. |.....:.:.:..|.     
Mouse   264 KERPPTFLTPEGNESHKEELR-GNVLSLECIAEGLPTPIIYWIKEDGMLPANRTFYRNFK----- 322

  Fly   495 DMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVH 559
                   ..|.|:||...|.|.|:|:|.|::|:|.|:..:.|...||                  
Mouse   323 -------KTLQITHVSEADSGNYQCIAKNALGAVHHTISVTVKAAPY------------------ 362

  Fly   560 CPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARR 624
                        |..|.|.|..|                    || :.|...|            
Mouse   363 ------------WIVAPQNLVLS--------------------PG-ENGTLIC------------ 382

  Fly   625 DMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFY 689
              :.|.|..|.|                              ||..:...|..:|....:|.: .
Mouse   383 --RANGNPKPRI------------------------------SWLTNGVPIEIALDDPSRKID-G 414

  Fly   690 SLLVFKDISARHSGKYTCYASN------AAAKVNYTAE-LQVRVAPRWRYEPMDTAIMLGNTISI 747
            ..::|.::....|..|.|.|||      |.|.||..|| .::..:....|:     ::......:
Mouse   415 DTIIFSNVQESSSAVYQCNASNKYGYLLANAFVNVLAEPPRILTSANTLYQ-----VIANRPALL 474

  Fly   748 NCEAEGYPIPTITWFKGQGKGS---KDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKK 809
            :|...|.|:|||.||||. |||   :|...|. .|.:|.:.:|..:..|.|.|.|.|::|.. |.
Mouse   475 DCAFFGSPMPTIEWFKGT-KGSALHEDIYVLH-DNGTLEIPVAQKDSTGTYTCVARNKLGMA-KN 536

  Fly   810 TIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPI--TIGWTQNNGRIDLNNFRFSIAEMK 872
            .:.:.:.:|.|..:.......:|...|:.:|..|.|..:  ||.|.::||.:. |:.|||     
Mouse   537 EVHLEIKDPTRIIKQPEYAVVQRGSKVSFECRVKHDHTLIPTIMWLKDNGELP-NDERFS----- 595

  Fly   873 TEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAV----------QERPDTPSHLEIFE 927
            |:|   ..|.:......|.|.|.|.|......|.....|.|          .:.|:.|..||:..
Mouse   596 TDK---DHLVVSDVKDDDGGTYTCTANTTLDSASASAVLRVVAPTPTPAPIYDVPNPPFDLELTN 657

  Fly   928 VGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYD 992
            ...::|:|:|....|.|||:..::::|:...:         ..|.|. |...||...|:      
Mouse   658 QLDKSVQLTWTPGDDNNSPITKFIIEYEDAMH---------DAGLWR-HQAEVSGTQTT------ 706

  Fly   993 SDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEA---IVLKTQEEAPTEAPSNVQVQTGGESE 1054
            :.|:       |:|...:..|:.|.|.|.||..:||   .:.|..|  |.:.|..|:........
Mouse   707 AQLK-------LSPYVNYSFRVMAENSIGRSMPSEASEQYLTKAAE--PDQNPMAVEGLGTEPDN 762

  Fly  1055 LIVTWQIPPRESW--NGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYS 1117
            |::||:  |...:  ||..:.|.|:..::..:..:.|||.:::...||||..|          :.
Mouse   763 LVITWK--PLNGFQSNGPGLQYKVSWRQKDGDDEWTSVVVANVSKYIVSGTPT----------FV 815

  Fly  1118 RYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQG 1182
            .|.:.::|:|..|..|..||:.|.:.|.:|..||.||..:.::|...::.|...|.:...|.:||
Mouse   816 PYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEVHWDPVPPKSVRGHLQG 880

  Fly  1183 YKILY-----------RPIVHQIDFPAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGLA 1236
            |:|.|           |.|..:|     |..:.|.. ...|..|...|:|::.|......|:|.|
Mouse   881 YRIYYWKTQSSSKRNRRHIEKKI-----LTFQGTKT-HGMLPGLQPYSHYALNVRVVNGKGEGPA 939

  Fly  1237 SHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTH--- 1298
            |......|.:.||.||:::|....|.||:.:.|..|.:.|||::.|.:..:...     .||   
Mouse   940 STDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILQYQPIN-----STHELG 999

  Fly  1299 -MVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRK 1362
             :|.:........:..::|..:..|:|:..|.||||.|                     .|:..:
Mouse  1000 PLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPG---------------------SQITEE 1043

  Fly  1363 AVGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNLFG 1427
            |:.|  |.|   .|.|.|                    :.|..|:..|...:| |.|.||...:.
Mouse  1044 AITT--VDE---AGIPPP--------------------DVGAGKVRAVNPRIS-NLTATAAETYA 1082

  Fly  1428 SDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGGAPLQGYTISYHTAG--ESWSITELL 1490
            :                             ::|:....|...   :.:.|..||  |.|....:.
Mouse  1083 N-----------------------------ITWEYEGPGHVT---FYVEYGVAGSKEEWRKEIVN 1115

  Fly  1491 PENNAFTISGLKCGNQYIIKMSAHN-----------MVGSGVASEEINVWTKG 1532
            ...:.|.:.||..|..|.:::.|..           ..|..:||.::::.|:|
Mouse  1116 GSRSFFGLKGLMPGTAYKVRVGAEGDSGFVSSEDVFETGPAMASRQVDIATQG 1168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 21/100 (21%)
Ig 264..334 CDD:143165 16/78 (21%)
I-set 345..433 CDD:254352 17/95 (18%)
Ig 358..431 CDD:143165 15/80 (19%)
Ig 456..533 CDD:143165 23/77 (30%)
IGc2 553..619 CDD:197706 9/65 (14%)
I-set 634..724 CDD:254352 20/96 (21%)
ig 645..712 CDD:278476 12/72 (17%)
IG_like 734..815 CDD:214653 25/83 (30%)
Ig 745..815 CDD:299845 25/72 (35%)
I-set 820..913 CDD:254352 25/94 (27%)
Ig 838..920 CDD:299845 24/93 (26%)
FN3 917..1033 CDD:238020 29/118 (25%)
FN3 1040..1142 CDD:238020 26/103 (25%)
fn3 1150..1237 CDD:278470 25/97 (26%)
FN3 1263..1345 CDD:238020 20/85 (24%)
Ig 1350..1436 CDD:299845 16/85 (19%)
IG_like 1358..1436 CDD:214653 16/77 (21%)
FN3 1441..1530 CDD:238020 16/101 (16%)
FN3 1542..1620 CDD:238020
NrcamXP_006516011.1 Ig_NrCAM 64..140 CDD:143282 16/78 (21%)
Ig 145..237 CDD:386229 17/95 (18%)
Ig 288..358 CDD:386229 23/81 (28%)
Ig4_NrCAM 375..450 CDD:143276 23/120 (19%)
IGc2 469..532 CDD:197706 23/64 (36%)
Ig 547..633 CDD:386229 25/94 (27%)
FN3 647..737 CDD:238020 29/112 (26%)
fn3 750..832 CDD:365830 22/93 (24%)
fn3 848..938 CDD:365830 24/95 (25%)
fn3 953..1037 CDD:365830 23/88 (26%)
fn3 1068..1136 CDD:365830 17/100 (17%)
Bravo_FIGEY 1191..1280 CDD:372781
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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