DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Dscaml1

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:2148 Identity:627/2148 - (29%)
Similarity:941/2148 - (43%) Gaps:287/2148 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 GLRVPTFLL-----------EPAPRLLFGNDT----------GAQVTCTAHGSPPPLVTWVLRDG 77
            |:.:.||||           :....|.|.||:          |..|.|.|.|||...:.|.|..|
  Rat    58 GMWLVTFLLLLDSLHKARPEDVGTSLYFVNDSLQHVTFSSSVGVVVPCPAAGSPSAALRWYLATG 122

  Fly    78 SLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHV 142
            .....||.:|.:..||||...||....:.:.:|:..|.|.|.|.||.:.|.|:::.||.|..:.|
  Rat   123 DDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPNIRIKAVFREPYTV 187

  Fly   143 HVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDLYVRSVR 207
            .||:.....||.|:.||.||..|:.||.|.||.:....:.|:     .|:.: .:.|.||:..|:
  Rat   188 RVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSITPE-----NRFFI-TSHGGLYISDVQ 246

  Fly   208 SEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHLPCNIQG 272
            .||.|..:.|:..:..:||.::|:...|.|.:.::::.  |.........|..|:.|.|||...|
  Rat   247 KEDALSTYRCITQHKYSGETRQSNGARLSVTDPAESIP--TILDGFHSQEVWTGHAVELPCAASG 309

  Fly   273 NPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSV 337
            .|.|...|  :.|..   |:|:..|.....|.|.|.:....|:|.:||:.:|.||.......|:|
  Rat   310 YPIPAIRW--LKDGR---PLPADSRWAKRITGLTISDLRTEDSGTYICEVTNTFGSAEANGVLTV 369

  Fly   338 NSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSL 402
            ...:.|.:.|:......|.|...:|..|||....|.|..|.:.:....|:     :||.||..:|
  Rat   370 IDPLHVTLTPKKLKTGIGSTVILSCALTGSPEFTIRWYRNTELVLPGEAI-----SIRGLSNETL 429

  Fly   403 LVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLKCSASGSPP 467
            |:.:..:...|.|||....:..:||..|.:.|.|..|.::.:|.|:.|.||...||.|:|.|:||
  Rat   430 LISSAQKSHSGAYQCFATRKAQTAQDFAIIVLEDGTPRIVSSFSEKVVNPGEQFSLMCAAKGAPP 494

  Fly   468 PQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSA 532
            |...|.||.:|::....|.   ..|:....|..|||:|::..:..|||:|:|.|.||:||.::.|
  Rat   495 PTVTWALDDEPVVRDGSHR---TNQYTMSDGTTISHMNVTGPQIRDGGVYRCTARNSVGSAEYQA 556

  Fly   533 RLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLV 597
            |:||.|||.:||:..|.||||.|.:::|...|||...|:|.| ...|...||.::  |.:.|.|.
  Rat   557 RINVRGPPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKWYK-DALLLPDNHRQV--VFENGTLK 618

  Fly   598 IKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDM 662
            :.:|:.|.|:|.|.|.|..:......:.:.:.|..||:|:||:||. ...|....|.|.||||||
  Rat   619 LTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPP-ASIGQLLYIPCVVSSGDM 682

  Fly   663 PIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVA 727
            ||..:|:||...|.|...:|.:.:||.|.|....:|.:|:|.|||.||||||.|:...:|.|||.
  Rat   683 PIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKHNGNYTCIASNAAATVSRERQLIVRVP 747

  Fly   728 PRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGS-KDFKPLSMR-------NHSLLL 784
            ||:..:|.:...:.|....:||..:|||.|.:.|...:|.|: :.:.|:.:.       |.|||:
  Rat   748 PRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKGSGNPQQYHPVPLTGRIQILPNSSLLI 812

  Fly   785 NLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPIT 849
            ....:.|.|||:|||:|.:|..:.|.:.:.|..||..........:.:.....|:|.|:|:.||.
  Rat   813 RHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMITSHPNTTIAIKGHAKELNCTARGERPII 877

  Fly   850 IGWTQNNGRIDLNN-FRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAV 913
            |.|.:.:..||.:. .|::||.......|.|.|.:..:||.||..:.|.|.|.||....:|.|.|
  Rat   878 IRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTV 942

  Fly   914 QERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVI 978
            ||.|| |..|||.||.:|::.|.|.:.|||||.:..:.::|:.          .:...|:.....
  Rat   943 QEPPD-PPELEIREVKARSMNLRWTQRFDGNSIITGFDIEYKN----------KSDSWDFKQSTR 996

  Fly   979 NVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQEEAPTEAPS 1043
            |:| |:.:           .|.:..|.||:.:.|||.:.|:|.||..::.:.:.|:|.||...|.
  Rat   997 NIS-PTIN-----------QANIVDLHPASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPM 1049

  Fly  1044 NVQVQTGGESELIVTWQIPPRESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKA 1108
            :|.:|......:.|||:.|.:|..||.:.||.:...|...        .|:.:.:||...||..:
  Rat  1050 DVTLQPVTSQSIQVTWKAPKKELQNGIIRGYQIGYRENSP--------GSNGQYSIVEMKATGDS 1106

  Fly  1109 ---TLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLE 1170
               ||..|:|:::|.|.::|.|..|:||.|:.|..||.|.||...|:||...:::|....|||.|
  Rat  1107 EVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPENVRALSITSDVAVISWSE 1171

  Fly  1171 PPLQFHGGIIQGYKILYRPIVHQIDFPAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGL 1235
            ||.....|:::||::::..:....:: .:::...|:.....|..:.|.:|||::|||||..|||:
  Rat  1172 PPRSTLNGVLKGYRVIFWSLYVDGEW-GEMQNVTTTRERVELRGMEKFTNYSVQVLAYTQAGDGV 1235

  Fly  1236 ASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMV 1300
            .|..|:.||.:|||..||.|||...:|.|:::|||.|...||:|..||::....|....|.:...
  Rat  1236 RSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEYE 1300

  Fly  1301 RVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVG 1365
            ...|.   :.:....|...|.|..||:|.||.|.|..:..:......:|||:|.|||..|.....
  Rat  1301 TSPEQ---LFYRIAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGGTVTTPWL 1362

  Fly  1366 TGLVLECLAVGNPTPRARWLTRDR-----PVTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNL 1425
            ..:.|.|.:||:|.|..:| |:|.     ||:......:...|.|.:..|:...||.|||||.|.
  Rat  1363 KDVRLPCNSVGDPAPAVKW-TKDSEDSAIPVSLDGHRLIHTNGTLLLRAVKAEDSGYYTCTATNT 1426

  Fly  1426 FGSDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGGAPLQGYTISYHT-AGESWSITEL 1489
            .|.|.|...::...||..|::.|...||.||.::|...|:||:.::|:.:.|.. ..|.|....:
  Rat  1427 GGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIRGFVLQYSVDNSEEWKDVFI 1491

  Fly  1490 LPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNANELIA-TNATCVNL 1553
            .....:|.:..||||..|.:|::|.|.||||..||.|...|.|:.........|.. .|:|...|
  Rat  1492 SSSERSFKLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINSTHARL 1556

  Fly  1554 KLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIFCDFLPAKWYQLRISATNDA 1618
            .|..|.||||.|....:|:||.|...|..|.::.|.      .:...:...|.||:||:.|.|.|
  Rat  1557 NLQGWNNGGCPITAIVLEYRPKGTWAWQGVRANSST------EVFLTELREATWYELRMRACNSA 1615

  Fly  1619 GKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINSTNPTSGDWFATLIVVVIITV------- 1676
            |...|...|:|.:.||.||||......|.|.:..|.....|..   .|||.|.::..|       
  Rat  1616 GCGNETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFTIGCPVI---LATLGVALLFVVRKKRKEK 1677

  Fly  1677 --------SIITIALTIKHRRTLCGPI-------------------AEGYESRTLPGDYK----- 1709
                    ..:...|..|:.|:...|:                   .|..|.....||.|     
  Rat  1678 RLKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQLGDDKATIPV 1742

  Fly  1710 --EDHENRRNQQVYSAS-----PVKTVDKGNESEMYEISP-------------YAT---FSVNGG 1751
              .:.....|.|.:...     |......|...:|.:|.|             ::|   :|....
  Rat  1743 TDAEFSQAVNPQSFCTGVSLHHPALIQSTGPLIDMSDIRPGTNPVSRKNVKSAHSTRNRYSSQWT 1807

  Fly  1752 RTGAPAKTPTRAVAAQTPLDYTMQFKTFGHPEGENLNATAYPLLPSSGFGHVKSKSSWHKQRYYN 1816
            .|...|.||.|.:        |..::|.|...|..                |....|:......:
  Rat  1808 LTKCQASTPARTL--------TSDWRTVGSQHGVT----------------VTESDSYSASLSQD 1848

  Fly  1817 TED-----ESTLSKSMTIVAGSQA-GHSKKSNGGRSAK------------SSAACSGVVAGSESD 1863
            |:.     .||.|.|.|....::| .|:|.....:.||            |....:|....::|.
  Rat  1849 TDKGRNSMVSTESASSTYEELARAYEHAKLEEQLQHAKFEITECFISDSSSDQMTTGTNENADSM 1913

  Fly  1864 TSIS-PS---------------------------------TEFSNMPTYRVPCKSSRSSDGRAVV 1894
            ||:| ||                                 :::.|:|.|.......|.:|||...
  Rat  1914 TSMSTPSEPGICRFTASPPKPQDADRGKNVAVPIPHRANKSDYCNLPLYTKSEAFFRKADGREPC 1978

  Fly  1895 DMFRPDSSTESNNDQGSPAPERRHNTPRHVLGMGMAMGLGGGGGGGVGGGNGPAEKRSAGQRSRK 1959
            .:..|..::..|      .....|...||:.                   ..||.|    .....
  Rat  1979 PVVPPREASMRN------LTRAYHTQARHLT-------------------LDPASK----PLGLP 2014

  Fly  1960 HGSAAQQPSNQTLERR----------KCPGSSNSLDSEVDAETAASLAASIAAMAGSGAGADLSG 2014
            |..|....:..||.:|          ..|.:.....||..|..:|:..|.......:|......|
  Rat  2015 HPGATAATATATLPQRTLAMPAPPAGTAPPAPGPTPSEPSAPPSAAPPAPSTEPPRAGGPHTKMG 2079

  Fly  2015 GFR 2017
            |.|
  Rat  2080 GSR 2082

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 27/76 (36%)
Ig 56..125 CDD:143165 25/68 (37%)
I-set 246..337 CDD:254352 26/90 (29%)
Ig 264..334 CDD:143165 22/69 (32%)
I-set 345..433 CDD:254352 24/87 (28%)
Ig 358..431 CDD:143165 20/72 (28%)
Ig 456..533 CDD:143165 29/76 (38%)
IGc2 553..619 CDD:197706 22/65 (34%)
I-set 634..724 CDD:254352 41/89 (46%)
ig 645..712 CDD:278476 29/66 (44%)
IG_like 734..815 CDD:214653 26/88 (30%)
Ig 745..815 CDD:299845 24/77 (31%)
I-set 820..913 CDD:254352 27/93 (29%)
Ig 838..920 CDD:299845 32/82 (39%)
FN3 917..1033 CDD:238020 32/115 (28%)
FN3 1040..1142 CDD:238020 31/104 (30%)
fn3 1150..1237 CDD:278470 27/86 (31%)
FN3 1263..1345 CDD:238020 23/81 (28%)
Ig 1350..1436 CDD:299845 32/90 (36%)
IG_like 1358..1436 CDD:214653 26/82 (32%)
FN3 1441..1530 CDD:238020 31/89 (35%)
FN3 1542..1620 CDD:238020 26/78 (33%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652 25/71 (35%)
IGc2 101..168 CDD:197706 23/66 (35%)
Ig 183..276 CDD:299845 30/98 (31%)
IG_like 195..276 CDD:214653 27/86 (31%)
I-set 291..369 CDD:254352 25/82 (30%)
IGc2 298..359 CDD:197706 21/65 (32%)
IGc2 386..447 CDD:197706 20/65 (31%)
I-set 466..560 CDD:254352 37/96 (39%)
Ig 466..556 CDD:299845 35/92 (38%)
IGc2 577..635 CDD:197706 21/60 (35%)
IG_like 665..744 CDD:214653 35/78 (45%)
Ig 673..739 CDD:143165 33/65 (51%)
I-set 748..843 CDD:254352 28/94 (30%)
Ig7_DSCAM 765..843 CDD:143211 24/77 (31%)
I-set 849..942 CDD:254352 27/92 (29%)
Ig 861..949 CDD:299845 32/88 (36%)
FN3 945..1039 CDD:238020 32/116 (28%)
FN3 1046..1143 CDD:238020 31/104 (30%)
fn3 1151..1237 CDD:278470 27/86 (31%)
FN3 1249..1340 CDD:238020 30/93 (32%)
IGc2 1364..1428 CDD:197706 22/64 (34%)
FN3 1442..1532 CDD:238020 31/89 (35%)
FN3 1546..1618 CDD:238020 26/77 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4784
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9015
orthoMCL 1 0.900 - - OOG6_101656
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.690

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