DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and sdk

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1930 Identity:413/1930 - (21%)
Similarity:666/1930 - (34%) Gaps:568/1930 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 FSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVME-IHVERGNDVHLPCNIQGNPFPIF 278
            |.|.....|  ::|.|   ::|.::|.   |||.|..|... ..|..|:...|.|:..|.|.|.:
  Fly    49 FFCYADANL--QQQNS---IVQQQQLQ---APRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTY 105

  Fly   279 TWYR----VSD--SAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFG---------- 327
            .|.:    |.|  |:..|...|::|               .|||.:.|.|.|..|          
  Fly   106 RWLKDGVPVGDFSSSQFYRFHSTRR---------------EDAGSYQCIARNDAGSIFSEKSDVV 155

  Fly   328 -------EQRIEIRLSV-NSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQAN 384
                   |...|.||:| :.:.::..:|.::.:               .:.::.|.....||..:
  Fly   156 VAYMGIFENTTEGRLTVISGHPAIFDMPPIESI---------------PVPSVMWQSEDGPLNYD 205

  Fly   385 NALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQ---RASAQAMAELKL-GD----TVPEL 441
                   ....|...:.|::.:....||..|:....|.   :..:.|...|.: ||    ..||:
  Fly   206 -------IKYAFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEI 263

  Fly   442 IYTFIEQNVRPGP-LISLKCSASGSPPPQF--AWLLDSQPIMDVSLHHRFAIGQFVDMSGD---- 499
            |....:..|:.|. ::.|:|.|:..|..:.  .||.|...:....:.|..         .|    
  Fly   264 IVRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTL---------NDPWNR 319

  Fly   500 --VISHLNISHVRPDDGGLYKC---VASNSMGSVQHSARLNVYGPPYVRAIGPIKAVA----GED 555
              .:...|.||     .|.|.|   :.|....:|..||||.:..||..  ..|::|..    |..
  Fly   320 TLALLQANSSH-----SGEYTCQVRLRSGGYPAVSASARLQILEPPLF--FTPMRAETFGEFGGQ 377

  Fly   556 IIVHCPFAGYPVEQIRWEK------AHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIV 614
            :.:.|...|.|..|::|.:      ||.|   |..|.|.:   ...||||.:... |..::.|:.
  Fly   378 VQLTCDVVGEPTPQVKWFRNAESVDAHIE---SGRYTLNT---DNTLVIKKLILD-DAAMFQCLA 435

  Fly   615 RSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSL 679
            .:.|||.: ....|.|.:       |..||                        :....:.|..|
  Fly   436 INEAGENS-ASTWLRVKT-------KTAKN------------------------RVKRLAQPRIL 468

  Fly   680 QITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNT 744
            :                :.|.|:|..:...|.:.:. :...|.:...||.....|.:...:.|..
  Fly   469 R----------------VRASHAGLGSEKGSESGSS-DRRKEFRFASAPIMELPPQNVTALDGKD 516

  Fly   745 ISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMR-----NHSLLLNLATDNDEGYYMCQATNEIG 804
            .:|:|.|.|.|.|.|||...:    .....:|.|     :..||::.....|.|.|:|...||.|
  Fly   517 ATISCRAVGSPNPNITWIYNE----TQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAG 577

  Fly   805 -----AGLKKTIRINVNEPARFEQSARNISSRRNDPV----------TLDCHAKGDE--PITIGW 852
                 |.|...:|..:.:|                ||          ||.|....|.  |..|.|
  Fly   578 SVKGEAYLSVLVRTQIIQP----------------PVDTTVLLGLTATLQCKVSSDPSVPYNIDW 626

  Fly   853 ---------TQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQI 908
                     ..|:.||.:.              .|.||.|......|.|.|.|:..:|.|...:.
  Fly   627 YREGQSSTPISNSQRIGVQ--------------ADGQLEIQAVRASDVGSYACVVTSPGGNETRA 677

  Fly   909 IFLAVQERPDTPSHLEIF---EVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAG 970
            ..|:|.|.|..||::::.   |...|::.:||...||||||:..:::|.:.:..|   |.:....
  Fly   678 ARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSEL---GPVPDPL 739

  Fly   971 GDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINEI-ERSAYTEAIVLKTQ 1034
            .:|...:.|||.....|            ::..|..||.:..|:.|:|.: |.|....:.|::..
  Fly   740 LNWITELSNVSADQRWI------------LLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELP 792

  Fly  1035 EEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTV--------NCSEEKQNINFISVV 1091
            :|||:..|..........||:|..||.|..|..||:::||.:        |.....|||     .
  Fly   793 QEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNI-----T 852

  Fly  1092 NSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNC 1156
            |.:.::.::....|.|          .|.|.|.|.|:.|.|.::......|.||||||.|.||..
  Fly   853 NEAQRNFLIQELITWK----------DYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKV 907

  Fly  1157 TALSSQSLKISWLEPPLQFHGGIIQGYKIL----------YRPIVHQIDFPAKLEIKRTSNLETY 1211
            .|::|.:.:..|..|..|...||.|||||.          :|.|..::.......|...:.....
  Fly   908 EAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAI 972

  Fly  1212 LHTLHKASNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRN 1276
            |..|.|.:.|:|.||.:|..|||:||..:...|.|||||....:....::..|:.:.|..|:..|
  Fly   973 LGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASN 1037

  Fly  1277 GIISHYTVYSREAGRKGQAKTHMVRVDENGYPVTFESRSLAENQM-----YEFWVSASTSVGEGE 1336
            ||::.|||..:...|....|:         :.:|.:...|..||:     |.|.:.|.|.||.|.
  Fly  1038 GILTGYTVRYQVKDRPDTLKS---------FNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGI 1093

  Fly  1337 PTS---------VIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVT 1392
            |.:         |:..|....|.:.|.:|..|::                               
  Fly  1094 PKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQ------------------------------- 1127

  Fly  1393 FSPFYEVTNEGNLKI--HRVEGSLSGNYT----C-------------------------TANNLF 1426
            |:|.:    :||..|  .:|||..:.|.|    |                         :|:|:.
  Fly  1128 FTPGF----DGNSSITKWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVV 1188

  Fly  1427 GSDE-----IQYQVIAMKPPSAP-QIIVQYASADSIRVSWDAPDDGGAPLQ---------GYTIS 1476
            ||.:     ..:|.|..:|...| .:.|:..||..:||.|       .|||         ||.||
  Fly  1189 GSSKPSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRW-------IPLQQTEWYGNPRGYNIS 1246

  Fly  1477 YHTAGESWSITELLPEN--------NAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGK 1533
            |....::....:.:|.:        |:..:..|:....|.:||:|.|.||   .|:|.:...:..
  Fly  1247 YKQLVKTPGTIKYVPRSVVIEDHTANSHVLDSLEEWTLYEVKMNACNDVG---CSKESDTAVERT 1308

  Fly  1534 ASQAPNANEL-IATNATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENL 1597
            ....|:...| :..|||.....:..|                          .::.....|.:  
  Fly  1309 REAVPSYGPLDVQANATSSTTVVVQW--------------------------GEVPRQHRNGQ-- 1345

  Fly  1598 IFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINSTNPTSG 1662
                                              |||.     .||.:..|....:::.|.|.:.
  Fly  1346 ----------------------------------IDGY-----KVFYAAADRGQQVLHKTIPNNA 1371

  Fly  1663 DWFATLIVV---VIITVSIITIALTIKHRRTLCGP---IAEGYESRTLPGDYKEDHENRRNQQVY 1721
            .:..||..:   |:..|.:  :|.|......|..|   :....::..:|.:......:....::.
  Fly  1372 TFTTTLTELKKYVVYHVQV--LAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARII 1434

  Fly  1722 SASPVKTVDKGNESEMYEISPYATFSVNGGRTGAPAKTPTRAVAAQTPLDYTMQFKTFGHPEGEN 1786
            ...|   ||...:...|::    |:::||                ...|:|:.:|.    |....
  Fly  1435 WDVP---VDPNGKILAYQV----TYTLNG----------------SAMLNYSREFP----PSDRT 1472

  Fly  1787 LNATAYPLLPSSGFGH---VKSKSSWHK---QRYYNTED-ESTLSKSMTIVAGSQAGHSKKSNGG 1844
            ..||  .|||...:..   .:::..|.|   ...|.|.: |...:.|:..::.||          
  Fly  1473 FRAT--ELLPGKYYSFSCTAQTRLGWGKIATALVYTTNNRERPQAPSVPQISRSQ---------- 1525

  Fly  1845 RSAKSSAACSGVVAGSESDTSISPSTE-FSNMPTYRVPCKSSRSSDGR--AVVDMFRPDSST--- 1903
                        :...:...|.:|..: |:.:..|.|   ..|.::||  .:.:...|..|:   
  Fly  1526 ------------IQAHQITFSWTPGRDGFAPLRYYTV---EMRENEGRWQPLPERVDPSLSSFTA 1575

  Fly  1904 -------------ESNNDQGSPAPERRHNTPRHVLGMGMAMGLGG 1935
                         ::.||.| |:...|.:.....|....|:|:||
  Fly  1576 VGLRPYMTYQFRIQATNDLG-PSAFSRESVIVRTLPAAPAVGVGG 1619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 29/114 (25%)
Ig 264..334 CDD:143165 21/92 (23%)
I-set 345..433 CDD:254352 11/90 (12%)
Ig 358..431 CDD:143165 10/75 (13%)
Ig 456..533 CDD:143165 18/87 (21%)
IGc2 553..619 CDD:197706 18/71 (25%)
I-set 634..724 CDD:254352 10/89 (11%)
ig 645..712 CDD:278476 6/66 (9%)
IG_like 734..815 CDD:214653 25/90 (28%)
Ig 745..815 CDD:299845 23/79 (29%)
I-set 820..913 CDD:254352 23/113 (20%)
Ig 838..920 CDD:299845 23/92 (25%)
FN3 917..1033 CDD:238020 30/119 (25%)
FN3 1040..1142 CDD:238020 26/109 (24%)
fn3 1150..1237 CDD:278470 29/96 (30%)
FN3 1263..1345 CDD:238020 24/95 (25%)
Ig 1350..1436 CDD:299845 19/121 (16%)
IG_like 1358..1436 CDD:214653 17/113 (15%)
FN3 1441..1530 CDD:238020 27/106 (25%)
FN3 1542..1620 CDD:238020 6/78 (8%)
sdkNP_001284756.1 Ig 71..157 CDD:299845 26/100 (26%)
I-set 72..150 CDD:254352 25/92 (27%)
Ig 172..245 CDD:299845 11/94 (12%)
IG_like 280..356 CDD:214653 21/89 (24%)
Ig 280..343 CDD:299845 15/76 (20%)
IG_like 375..450 CDD:214653 22/82 (27%)
Ig 378..447 CDD:143165 20/76 (26%)
Ig 506..587 CDD:299845 24/84 (29%)
IG_like 506..587 CDD:214653 24/84 (29%)
I-set 592..682 CDD:254352 24/119 (20%)
Ig 595..682 CDD:299845 24/116 (21%)
FN3 686..789 CDD:238020 29/117 (25%)
FN3 798..893 CDD:238020 26/109 (24%)
FN3 901..1005 CDD:238020 31/103 (30%)
fn3 1011..1094 CDD:278470 23/91 (25%)
FN3 1108..1202 CDD:238020 20/128 (16%)
FN3 1210..1308 CDD:238020 27/107 (25%)
fn3 1317..1402 CDD:278470 20/153 (13%)
FN3 1415..1507 CDD:238020 20/120 (17%)
FN3 1513..1608 CDD:238020 18/120 (15%)
fn3 1617..1708 CDD:278470 2/3 (67%)
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I8189
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.810

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