DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Igsf9

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001100667.1 Gene:Igsf9 / 304982 RGDID:1304566 Length:1179 Species:Rattus norvegicus


Alignment Length:1397 Identity:269/1397 - (19%)
Similarity:439/1397 - (31%) Gaps:453/1397 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 ILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCT 363
            |||  |:|.:.||               |.::.|:       |||       :..:|.:|...|.
  Rat     9 ILS--LILSQGAD---------------GRRKPEV-------VSV-------VGRAGESAVLGCD 42

  Fly   364 TTGSA----IDAIDWLHNG--KPLQANNALTTGR------DNIRFLSKSSLLVQNVGRRDRGVYQ 416
            ....|    :..|:||..|  .|:.....|.:.|      ..:|..:.:||.::.:...|:|.|:
  Rat    43 LLPPAGRPPLHVIEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRLQTGASLQIEGLRVEDQGWYE 107

  Fly   417 C--LVENQRASAQAMAELKLGDTV-------------PELIYTFIEQNVRPGPLISLKCSASGSP 466
            |  |..:|.:..|..|.   |..|             |.|:.     .|:....::|:|.|.|||
  Rat   108 CRVLFLDQHSPEQDFAN---GSWVHLTVNSPPQFQETPPLVL-----EVKELEAVTLRCVALGSP 164

  Fly   467 PPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHS 531
            .|...|....|.:..       ..||....:|.    |.|..|.....|.|.|.||::.|||.|:
  Rat   165 QPYVTWKFRGQDLGK-------GQGQVQVRNGT----LWIRRVERGSAGDYTCQASSTEGSVTHT 218

  Fly   532 ARLNVYGPPYVRAIGPIKAV--AGEDIIVHCPFAGYPVEQIRWEKAHQELTTS------NHYELA 588
            .:|.|.|||.: .:.|....  |.:|:.:.|....||.          .||.|      |.:.::
  Rat   219 TQLLVLGPPVI-VVPPNNNTVNASQDVSLACRAEAYPA----------NLTYSWFQDRINVFHIS 272

  Fly   589 SVAD------GGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQE 647
            .:..      .|.|.::..:|. |.|.|||:..:...........|.|..|..:........|..
  Rat   273 RLQSRVRILVDGSLWLQATQPD-DAGHYTCVPSNGFPHPPSASAYLTVLYPAQVTVMPPETPLPI 336

  Fly   648 GGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNA 712
            |.|..|.|.|.:....::.:|.||..:                                      
  Rat   337 GMRGVIRCPVRANPPLLFVTWTKDGQA-------------------------------------- 363

  Fly   713 AAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSM 777
                     ||:...|.|...|                 ||                        
  Rat   364 ---------LQLDKFPGWSLGP-----------------EG------------------------ 378

  Fly   778 RNHSLLLNLATDNDEGYYMCQATNEIG-AGLKKTIRINVNEPARF-EQSARNISSRRNDPVTLDC 840
               ||::.|..::..|.|.|...|.:| ||.....|:.:..|..| :|............:.:.|
  Rat   379 ---SLVIALGNEDALGEYSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPC 440

  Fly   841 HAKGDEPITIGWT------QNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAE 899
            .|:||.|..:.|.      |...::|.||                .|.:....:...|.:.|.|.
  Rat   441 SARGDPPPIVSWAKVGRGLQGQAQVDSNN----------------SLILRPLTKEAHGRWECSAR 489

  Fly   900 NPYGR---AEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQ 961
            |....   :..:..|...  |...:::.:..: .:...:||...|||     .||.:: ::.|..
  Rat   490 NAVAHVTISTNVYVLGTS--PHVVTNVSVVPL-PKGANVSWEPGFDG-----GYLQRF-SVWYTP 545

  Fly   962 SHGSLAAAGGDWNGHVINVSLP--STSISRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSA 1024
            .......|..||    :::::|  :|.:            :|.||...|.:...:.|.|::....
  Rat   546 LAKRPDRAHHDW----VSLAVPMGATHL------------LVPGLQAYTQYQFSVLAQNKLGSGP 594

  Fly  1025 YTEAIVLKTQEEAPTE---------------APSNVQVQTGGESELIVTWQIPPRESWNGELI-- 1072
            ::| |||...|..||.               :|....|.......:::.|. ||      |||  
  Rat   595 FSE-IVLSIPEGLPTTPAVPRLPPTEMPPPLSPPRGLVAVRTPRGVLLHWD-PP------ELIPE 651

  Fly  1073 ---GYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAM-NSFGSGP 1133
               ||.:   |.:|......:::..:..|.:      :..:.||.|...|...:.|. :|:.|.|
  Rat   652 RLDGYIL---EGRQGSQGWEILDQGVAGTEI------QLLVPGLIKDVLYEFRLVAFADSYVSDP 707

  Fly  1134 WSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPA 1198
            .:.|...|:  |: |..|.......|..|        |.|   .|::.|...|...::..|....
  Rat   708 SNIANISTS--GL-EVYPSRTQLPGLLPQ--------PVL---AGVVGGVCFLGVAVLVSILAAC 758

  Fly  1199 KLEIKRTSNLETYLHTLHKASNYSIRVLAYTATG-DGLASHPLFCQTDDDVPDAPAAIKAAALTA 1262
            .:..:|.:.       .|:........|.::..| .|..|.|     ..|.||:....|......
  Rat   759 LMNRRRAAR-------RHRKRLRQDPPLIFSPRGRSGPHSAP-----GSDSPDSVTKFKLQGSPV 811

  Fly  1263 DSILISWL-------------TPKNRNGIISHYTVYSREAGR--------KGQAKTHMVRVDENG 1306
            .|:..|.|             :|..| |.:....:.....||        ..|.|..:.|     
  Rat   812 PSLRQSLLWGEPARPPSPHPDSPLGR-GPLPLEPICRGPDGRFVMGPTVAPPQEKLCLER----- 870

  Fly  1307 YPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLE 1371
                .|.|:.|:........|:|:..|..:|..:...:...:.||.:.|      ...|.|.:|:
  Rat   871 ----SEPRTSAKRLAQSLDCSSSSPSGVPQPLCITDISPVGQPPAAMPS------PLPGPGPLLQ 925

  Fly  1372 CLAV----------------------------GNPTPRARWL-TRDRP----------------V 1391
            .|::                            .:|.|.:.:| ..|.|                |
  Rat   926 YLSLPFFREMNVDGDWPPLEEPTPASPPDFMGSHPCPTSSFLPPPDSPPTNLRAVLPGTLMGVGV 990

  Fly  1392 TFSPFYEVTNEGNLKIHRVEGSLS----GNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYAS 1452
            :..|.|....:..|:...:.|.||    |:.|..::   |.....:    ::|||.         
  Rat   991 SSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQSS---GRGSASF----LRPPST--------- 1039

  Fly  1453 ADSIRVSWDAPDDGG---APLQGYTISYHTAGESWSITELLPENNAFTISGLKCGNQYIIKMSAH 1514
                     ||..||   :|..|.|.|:.:..|.|...|                  :::.:|..
  Rat  1040 ---------APSAGGSYLSPAPGDTSSWASGPERWPRRE------------------HVVTVSKR 1077

  Fly  1515 NMVGSGVASEEINVWTKGKASQAPNANELIAT 1546
            .    ..:.:|...|.    |:.|...||:.|
  Rat  1078 R----NTSVDENYEWD----SEFPGDMELLET 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 9/37 (24%)
Ig 264..334 CDD:143165 9/34 (26%)
I-set 345..433 CDD:254352 22/101 (22%)
Ig 358..431 CDD:143165 20/86 (23%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 16/77 (21%)
I-set 634..724 CDD:254352 10/89 (11%)
ig 645..712 CDD:278476 9/66 (14%)
IG_like 734..815 CDD:214653 14/81 (17%)
Ig 745..815 CDD:299845 13/70 (19%)
I-set 820..913 CDD:254352 18/102 (18%)
Ig 838..920 CDD:299845 17/90 (19%)
FN3 917..1033 CDD:238020 24/117 (21%)
FN3 1040..1142 CDD:238020 22/122 (18%)
fn3 1150..1237 CDD:278470 14/87 (16%)
FN3 1263..1345 CDD:238020 18/102 (18%)
Ig 1350..1436 CDD:299845 22/134 (16%)
IG_like 1358..1436 CDD:214653 19/126 (15%)
FN3 1441..1530 CDD:238020 15/91 (16%)
FN3 1542..1620 CDD:238020 3/5 (60%)
Igsf9NP_001100667.1 IG 28..110 CDD:214652 20/88 (23%)
Ig strand A 136..139 CDD:409353 0/2 (0%)
IG_like 143..223 CDD:214653 27/95 (28%)
Ig strand A' 145..148 CDD:409353 0/7 (0%)
Ig strand B 154..161 CDD:409353 2/6 (33%)
Ig strand C 167..172 CDD:409353 1/4 (25%)
Ig strand C' 175..177 CDD:409353 1/1 (100%)
Ig strand D 183..187 CDD:409353 1/3 (33%)
Ig strand E 189..193 CDD:409353 2/7 (29%)
Ig strand F 202..210 CDD:409353 4/7 (57%)
Ig strand G 213..223 CDD:409353 5/9 (56%)
Ig_3 226..305 CDD:404760 20/90 (22%)
putative Ig strand A 226..230 CDD:409353 2/4 (50%)
putative Ig strand A' 235..239 CDD:409353 0/3 (0%)
putative Ig strand B 241..251 CDD:409353 2/9 (22%)
putative Ig strand C' 267..270 CDD:409353 1/2 (50%)
putative Ig strand D 279..282 CDD:409353 0/2 (0%)
putative Ig strand E 284..290 CDD:409353 2/5 (40%)
putative Ig strand F 297..305 CDD:409353 4/7 (57%)
putative Ig strand G 310..319 CDD:409353 1/8 (13%)
Ig 322..407 CDD:416386 27/175 (15%)
Ig strand A' 324..328 CDD:409353 0/3 (0%)
Ig strand B 333..347 CDD:409353 5/13 (38%)
Ig strand C 353..359 CDD:409353 1/5 (20%)
Ig strand C' 362..364 CDD:409353 0/48 (0%)
Ig strand D 371..374 CDD:409353 1/2 (50%)
Ig strand E 378..382 CDD:409353 3/30 (10%)
Ig strand F 391..399 CDD:409353 3/7 (43%)
Ig 418..503 CDD:416386 17/100 (17%)
Ig strand A 418..421 CDD:409353 0/2 (0%)
Ig strand A' 427..430 CDD:409353 0/2 (0%)
Ig strand B 436..443 CDD:409353 1/6 (17%)
Ig strand C 449..454 CDD:409353 1/4 (25%)
Ig strand C' 457..459 CDD:409353 0/1 (0%)
Ig strand D 462..466 CDD:409353 0/3 (0%)
Ig strand E 469..473 CDD:409353 2/19 (11%)
Ig strand F 482..490 CDD:409353 3/7 (43%)
Ig strand G 493..503 CDD:409353 0/9 (0%)
FN3 508..599 CDD:238020 21/114 (18%)
FN3 625..715 CDD:238020 22/105 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 766..807 10/52 (19%)
PHA03247 <777..1062 CDD:223021 60/330 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 819..846 4/27 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 869..895 7/34 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 942..979 5/36 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1079 18/109 (17%)
PDZ-binding. /evidence=ECO:0000250 1177..1179
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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