DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Ceacam16

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001163050.1 Gene:Ceacam16 / 292700 RGDID:1306386 Length:426 Species:Rattus norvegicus


Alignment Length:320 Identity:77/320 - (24%)
Similarity:112/320 - (35%) Gaps:61/320 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 GKWICQASN-QFGEQRIEIRLSVNSYVSVHILPQVQ-----IVNSGGTANFNCTTTGSAIDAIDW 374
            |.:|.|..| ||   :.|:.........:...|.|.     :|....|....|::...|  .:.|
  Rat   106 GTYILQTLNRQF---QTEVGYGHMQV
YEILAPPTVMANDTALVERRDTLRLICSSPSPA--EVRW 165

  Fly   375 LHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTV- 438
            ..||..|.....|....|. |.|::     ..|.|.:.|.|||.|.|. .|......|.|  || 
  Rat   166 FFNGDALPVAVRLGLSPDG-RMLTR-----HGVRREEAGAYQCEVWNP-VSVSRSEPLNL--TVY 221

  Fly   439 --PELIYTFIEQNVRPGPLI--------SLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQF 493
              ||.:....:...|.|..|        :|.|.:...|.|::.|..:.:.:.:         || 
  Rat   222 FGPERVAILQDSTTRTGCTIKVDFNTSLTLWCVSRSCPEPEYVWAFNGKALKN---------GQ- 276

  Fly   494 VDMSGDVISHLNISHVRPDDGGLYKCVASNS----MGSVQHSARLNVYGPPYVRAIGPIKAVAGE 554
                    .|||||.:..|..|.|.|:|.||    .||.....:|:......:....|.|.:.|:
  Rat   277 --------DHLNISSMSADHEGTYTCIAKNSKTLLSGSASVVVKLSAAAVAMMIVPVPTKPMEGQ 333

  Fly   555 DIIVHCPFAGYPVEQI--RWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTC 612
            |:.:  ...|||.:.:  .|.:.    ..|....|.|....|..:......||:.|...|
  Rat   334 DVTL--TVQGYPKDLLVYAWYRG----PASEPNRLLSQLPSGNWIAGPAHTGREVGFANC 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 7/21 (33%)
Ig 264..334 CDD:143165 7/18 (39%)
I-set 345..433 CDD:254352 23/92 (25%)
Ig 358..431 CDD:143165 19/72 (26%)
Ig 456..533 CDD:143165 22/88 (25%)
IGc2 553..619 CDD:197706 14/62 (23%)
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Ceacam16NP_001163050.1 Ig_CEACAM_D1 24..128 CDD:143251 7/24 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 77..96
Ig 140..220 CDD:299845 23/90 (26%)
IG_like 144..220 CDD:214653 23/86 (27%)
I-set 224..313 CDD:254352 26/106 (25%)
Ig_2 248..311 CDD:290606 21/80 (26%)
Ig_CEACAM_D1 320..422 CDD:143251 16/74 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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