DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Dscam4

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:2035 Identity:654/2035 - (32%)
Similarity:1028/2035 - (50%) Gaps:235/2035 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LEKALLLGALLLAVLATPLLATSGLRV--PTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWV 73
            |.||:|   :|..:.|......:||.:  |.||.||..|:.|.|::|..:.|:.||||||.|.| 
  Fly     6 LFKAIL---ILYVIRAETSQFVNGLDLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEW- 66

  Fly    74 LRDGSLATQVPGLRKI---SGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAV 135
                   |.:|..:.:   ..||::.|.||.|:.||.:||...|||:..|..||||||.|.|..|
  Fly    67 -------TPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSREVHVRGV 124

  Fly   136 VRRQFHVHVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGD 200
            |.:::.|.|.:..|..||:|::||.:|.|:..:|.|.:|.:...:.|...:|:.|:|.|| ::|:
  Fly   125 VNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVL-SNGE 188

  Fly   201 LYVRSVRSEDGLMKFSCLVTNTLNGERQRSD-AVMLQVKELSKNLAPRTTQKPVMEIHVERGNDV 264
            ||:.:....|....::|...|.|.||.|.|. ...:.|.|....:.||...:.....||......
  Fly   189 LYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQT 253

  Fly   265 HLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRV-ILSRTLLLIKNADERDAGKWICQASNQFGE 328
            .|||..||:|.|.:.|:: .::..|.|:..|:|: |:|..||.|..|...|:||::|..:|..||
  Fly   254 TLPCIAQGHPVPTYRWFK-EENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGE 317

  Fly   329 QRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDN 393
            :.|::.|:|.:.::.|:.||||.|:....|.|.|..:|..:..::|||:|||:..:|.:....|.
  Fly   318 ETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDP 382

  Fly   394 IRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISL 458
            .|      |:::.|.:.|.|:|||.|.|:....|:.|||:|||..|||:|.|.||.::|||.:||
  Fly   383 PR------LIIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQPGPTVSL 441

  Fly   459 KCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASN 523
            ||.|:|:|.|||.|.||..||.|.|   ||.:||:|.:..|||||:|||:|:.:|||.|.|.|.|
  Fly   442 KCVATGNPLPQFTWSLDGFPIPDSS---RFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQN 503

  Fly   524 SMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELA 588
            ::|.|.|||::|:||.||:|.:..|..::|.|:||.||.||||:::|.||:..|.|..:....  
  Fly   504 AIGKVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQR-- 566

  Fly   589 SVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKN-LQEGGRAQ 652
             ..:.|.|:|:.::...|.|.|||:.:::..:.:||::::.|..||.|.|.:...| |:||.||.
  Fly   567 -AYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAA 630

  Fly   653 ITCAVSSGDMPIYFSWKKDDSS-IPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKV 716
            |:|.:..||:|:.|.|:::... |.:..::..:.:|:.:.||.:.||:.|||.|||.|||.|...
  Fly   631 ISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTE 695

  Fly   717 NYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMR--- 778
            .:|..|.|.|.|:|..||.|::...|..:.::|::.|||.|||||.|..|....::|.....   
  Fly   696 RFTVPLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTV 760

  Fly   779 ----NHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLD 839
                |.::.....:...:|:::|:|.|.||:|:.|.|.:.||.||.|:...:.||..:...|.:.
  Fly   761 QLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQ 825

  Fly   840 CHAKGDEPITIGW----TQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAEN 900
            |:.:||.||...|    ||......|:: |::|.:...:.|:.|:|.|.|:.|.|:|:|.|.|.|
  Fly   826 CNVQGDNPIDFKWKIQATQQYLDESLDS-RYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASN 889

  Fly   901 PYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYL-QSHG 964
            .:|:.|..|.|.|||.|:.|.:|.|....||:::|:|.:||.||||:..|.:.|:.:..: |:..
  Fly   890 AFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAE 954

  Fly   965 SLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEAI 1029
            .|..||..   .|||:.                     .|.||..:.|||.|.|::..|.::|.:
  Fly   955 HLTIAGAQ---TVINIQ---------------------QLRPAKAYHIRMSAENKLGASEFSEVV 995

  Fly  1030 VLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTV----NCSEEKQNINFISV 1090
            .:.|.||.|:..|..|:.:....:|:.|||..|.|:.|||.|:||.|    :.:.|.:.:|  ..
  Fly   996 QVTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVN--PT 1058

  Fly  1091 VNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVN 1155
            ...|.|:..|......:..|..|.|:::|.|.::|..|.||||.|..|...|.|.||.:.|::..
  Fly  1059 QGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQ 1123

  Fly  1156 CTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPI--VHQIDFPAKLEIKRTSNLETYLHTLHKA 1218
            |..|.|.|:.|:|..|.:....|.|:|||:.|..:  :::.| |   |:.:::|....:..|.|.
  Fly  1124 CDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETD-P---EVVKSTNQYVTIENLRKY 1184

  Fly  1219 SNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYT 1283
            :||::.|||||..|||:.:.|.:|:|.:|||.||.||||...::..|:||||.|...||.|:.||
  Fly  1185 TNYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYT 1249

  Fly  1284 VYSR--EAGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGEGEPTSVIAQATN 1346
            .|..  |.||:......::    ..:....|:....|:..|:||::|||.:||||.|.|:....|
  Fly  1250 FYMSMLEGGREEGTHKRLL----GPFVEMHETVRTQESATYQFWLTASTKMGEGEKTQVVTVPPN 1310

  Fly  1347 TRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEVTNEGNLKIHRVE 1411
            .:.||||.||.|.:.......|.|.|..||.|.|...|......:..|....:...|.|.:...:
  Fly  1311 NKVPARIVSFSQRIVTPWKEHLELPCRKVGAPAPVTIWRQDGHNMETSARKTIAKNGTLYMKECQ 1375

  Fly  1412 GSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDGGAPLQGYTIS 1476
            .|.:|||||:..|.:|.|||.|.::...||.||.:.|..|..||:.:.|.....||:|:.||.|:
  Fly  1376 ASDAGNYTCSVENTWGKDEIVYNIVVKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPILGYVIN 1440

  Fly  1477 YHTAGESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKASQAPNAN 1541
            |......|...::..:..:..::.|.||.:|.:.::|:|.:|:|:..:.:|.:|||.....|..:
  Fly  1441 YKRDNGDWEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHS 1505

  Fly  1542 ELIATNATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIF--CDFLP 1604
            ::|..|:|.|...|.||.:|||.|.:|.||.|..|...|.||::.|...|.     |:  .|.:|
  Fly  1506 QMITNNSTSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTER-----IYTVSDLVP 1565

  Fly  1605 AKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINSTNPTS--GDW--- 1664
            ...|||:::|.|:||.||..|:|:|.:..|:             :.||  :.:.|.|  .|.   
  Fly  1566 GTKYQLKVTAHNNAGSTTAIYNFTTLSTQGV-------------IYNN--DHSTPVSHLSDLPFY 1615

  Fly  1665 --FATLIVV---VIITVSIITIALTIKHRRTLCGPIAEGYESRTLPGDYKE-----DHENRRNQ- 1718
              |..|:.:   :::.:::|..||.::.|:.       ..::|.......|     :.:|::|: 
  Fly  1616 ANFKLLLPICFSLLMLLALIGAALFLRKRKL-------ASQARLASSSMSESPSLANLQNKQNRD 1673

  Fly  1719 QVYSA---SPVKTVDKGNESE-------------MYEISPYATFSVN------GGRTGAPAKTPT 1761
            |.|.|   :|..:..:|:.|.             :.:|.|||||.:|      ...:|.....|.
  Fly  1674 QQYLAVRCNPGTSAPRGSNSNDSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPY 1738

  Fly  1762 RAVA--------------AQTPLDYTMQFKTFG-----HPEGE------------------NLNA 1789
            .:|.              ::.| :||...:..|     |.|.:                  ::..
  Fly  1739 HSVRGSFVYHDVKPESYHSKEP-EYTKVRRKVGRLRDPHSESQESDNPGSTDSEVRKILTLHIPI 1802

  Fly  1790 TAYPLLPSSGFGHVKSK----SSWHKQRYYNTEDESTLSKSMTIVA---------GSQAGHSKKS 1841
            |.|..|.|.....|.::    :.:..||  :|:||::.|...|..:         .::.|....:
  Fly  1803 TEYDTLGSESDNDVSARALNSAKYRAQR--DTQDETSSSSETTPTSMTRKSKPPFAARKGGKPGT 1865

  Fly  1842 NGGRSAKSSAACSGVVAGSESDT-SISPSTEFSNMPTYRVPCKSSRSSDGRAVVDMFRPDSSTES 1905
            :|.|..:||   ||..:.:|..| |||     :..|.|:               |...|.:....
  Fly  1866 SGKRHVRSS---SGYSSHNEETTFSIS-----NYPPNYQ---------------DHINPPARFSD 1907

  Fly  1906 NND--QGSPAPERRHNTPRH 1923
            .||  :...:|..|.|...|
  Fly  1908 ANDKTKTQTSPRMRANQKLH 1927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 32/79 (41%)
Ig 56..125 CDD:143165 26/71 (37%)
I-set 246..337 CDD:254352 31/91 (34%)
Ig 264..334 CDD:143165 26/70 (37%)
I-set 345..433 CDD:254352 30/87 (34%)
Ig 358..431 CDD:143165 23/72 (32%)
Ig 456..533 CDD:143165 42/76 (55%)
IGc2 553..619 CDD:197706 23/65 (35%)
I-set 634..724 CDD:254352 34/91 (37%)
ig 645..712 CDD:278476 26/67 (39%)
IG_like 734..815 CDD:214653 25/87 (29%)
Ig 745..815 CDD:299845 22/76 (29%)
I-set 820..913 CDD:254352 31/96 (32%)
Ig 838..920 CDD:299845 31/85 (36%)
FN3 917..1033 CDD:238020 33/116 (28%)
FN3 1040..1142 CDD:238020 33/105 (31%)
fn3 1150..1237 CDD:278470 30/88 (34%)
FN3 1263..1345 CDD:238020 29/83 (35%)
Ig 1350..1436 CDD:299845 30/85 (35%)
IG_like 1358..1436 CDD:214653 24/77 (31%)
FN3 1441..1530 CDD:238020 25/88 (28%)
FN3 1542..1620 CDD:238020 30/79 (38%)
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 42/100 (42%)
Ig strand A 32..35 CDD:409353 1/2 (50%)
Ig strand A' 41..45 CDD:409353 1/3 (33%)
Ig strand B 48..57 CDD:409353 2/8 (25%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 1/4 (25%)
Ig strand F 101..109 CDD:409353 3/7 (43%)
Ig strand G 112..124 CDD:409353 8/11 (73%)
Ig 235..326 CDD:416386 31/91 (34%)
Ig strand A 235..238 CDD:409353 2/2 (100%)
Ig strand A' 244..248 CDD:409353 1/3 (33%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 1/4 (25%)
Ig strand C' 276..279 CDD:409353 1/2 (50%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 3/5 (60%)
Ig strand F 305..313 CDD:409353 3/7 (43%)
Ig strand G 316..326 CDD:409353 4/9 (44%)
IgC2_3_Dscam 329..417 CDD:409549 32/93 (34%)
Ig strand B 347..351 CDD:409549 2/3 (67%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 2/9 (22%)
Ig strand F 397..402 CDD:409549 3/4 (75%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 53/96 (55%)
Ig strand B 439..443 CDD:409548 2/3 (67%)
Ig strand C 452..456 CDD:409548 2/3 (67%)
Ig strand E 482..486 CDD:409548 2/3 (67%)
Ig strand F 496..501 CDD:409548 2/4 (50%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 29/89 (33%)
Ig strand B 536..540 CDD:409550 2/3 (67%)
Ig strand C 549..553 CDD:409550 1/3 (33%)
Ig strand E 571..575 CDD:409550 2/3 (67%)
Ig strand F 586..591 CDD:409550 3/4 (75%)
Ig strand G 600..603 CDD:409550 2/2 (100%)
Ig 610..703 CDD:416386 35/92 (38%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 4/8 (50%)
Ig strand C 641..648 CDD:409353 3/6 (50%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 0/4 (0%)
Ig strand E 668..675 CDD:409353 2/6 (33%)
Ig strand F 682..690 CDD:409353 5/7 (71%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 28/94 (30%)
Ig strand B 724..728 CDD:409546 0/3 (0%)
Ig strand C 737..741 CDD:409546 3/3 (100%)
Ig strand E 766..770 CDD:409546 0/3 (0%)
Ig strand F 780..785 CDD:409546 1/4 (25%)
Ig strand G 794..797 CDD:409546 1/2 (50%)
Ig 818..904 CDD:416386 29/86 (34%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 1/3 (33%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 3/5 (60%)
putative Ig strand F 881..889 CDD:409353 4/7 (57%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 33/116 (28%)
FN3 1006..1110 CDD:238020 33/105 (31%)
fn3 1117..1203 CDD:394996 30/89 (34%)
FN3 1215..1307 CDD:238020 36/95 (38%)
Ig <1334..1401 CDD:416386 22/66 (33%)
Ig strand C 1345..1349 CDD:409353 0/3 (0%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 2/4 (50%)
Ig strand F 1380..1388 CDD:409353 5/7 (71%)
Ig strand G 1394..1401 CDD:409353 3/6 (50%)
FN3 1405..1494 CDD:238020 25/88 (28%)
FN3 1499..1580 CDD:238020 30/85 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.720

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