DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Ceacam2

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001106839.1 Gene:Ceacam2 / 26367 MGIID:1347246 Length:520 Species:Mus musculus


Alignment Length:583 Identity:131/583 - (22%)
Similarity:203/583 - (34%) Gaps:157/583 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   526 GSVQHSARLNVYGPPYVRAIG----PIKAVAGEDII--VHCPFAGYPVEQIRWEKAHQELTTSNH 584
            |.:..::.|..:.||....:.    |:.|..|.::|  |:....|  |....|   |:..|||.:
Mouse    17 GLLLTASLLASWSPPTTAQVTVMAFPLHAAEGNNVILVVYNMMKG--VSAFSW---HKGSTTSTN 76

  Fly   585 YELASVADGGQLVIKN-VEPGR-----------------DQGIYTCIVRSRAGEEARRDM---QL 628
            .|:.....|....||. |..||                 |.|:||.   ....:..||.:   |.
Mouse    77 AEIVRFVTGTNKTIKGPVHSGRETLYSNGSLLIQRVTMKDTGVYTI---EMTDQNYRRRVLTGQF 138

  Fly   629 NV------------NSPPVIEPFKFPKNLQEG-GRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQ 680
            :|            ||.||           || ....:||...:....|.:.|.::..|:....:
Mouse   139 HVHTLLLKSNITSNNSNPV-----------EGDDSVSLTCDSYTDPDNITYLWSRNGESLSEGDR 192

  Fly   681 ITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIML---- 741
            :  |..|....|...:::...:|.|.|...|..: ||.:....:.:.    |.| ||.|:.    
Mouse   193 L--KLSEGNRTLTLLNVTRNDTGPYVCETRNPVS-VNRSDPFSLNII----YGP-DTPIISPSDI 249

  Fly   742 ----GNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNE 802
                |:.::::|.|...|.....|...:       ||.:......:.|:.| |:.|.|.|...|.
Mouse   250 YLHPGSNLNLSCHAASNPPAQYFWLINE-------KPHASSQELFIPNITT-NNSGTYTCFVNNS 306

  Fly   803 IGAGLKKTI--RINVNEP-ARFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRIDLNNF 864
            : .||.:|.  .|.|.|| .:......|.:.:..|.|||.|.:| |....|.|..||..:     
Mouse   307 V-TGLSRTTVKNITVLEPVTQPSLQVTNTTVKELDSVTLTCLSK-DRQAHIHWIFNNDTL----- 364

  Fly   865 RFSIAEMKTEKGVDSQ----LTIGHSDRHDSGVYRCIAENPYG--RAE----QIIFLAVQERPDT 919
                  :.|||...||    |.|....|.|:|.|:|...||..  |:.    ::||.:..:..|.
Mouse   365 ------LITEKMTTSQAGLILKIDPIKREDAGEYQCEISNPVSVKRSNSIKLEVIFDSTYDISDV 423

  Fly   920 PSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPS 984
            |  :.:...|:                 ::.::....|.|     .|.:....|.          
Mouse   424 P--IAVIITGA-----------------VAGVILIAGLAY-----RLCSRKSRWG---------- 454

  Fly   985 TSISRSYDSDLRE---SAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQEEAPTEAPSN 1044
                 |...||.|   ||....|.|:.      .:.|:::..|||.......|...||.|||:
Mouse   455 -----SDQRDLTEHKPSASNHNLAPSD------NSPNKVDDVAYTVLNFNSQQPNRPTSAPSS 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 1/6 (17%)
IGc2 553..619 CDD:197706 21/85 (25%)
I-set 634..724 CDD:254352 18/90 (20%)
ig 645..712 CDD:278476 13/67 (19%)
IG_like 734..815 CDD:214653 22/90 (24%)
Ig 745..815 CDD:299845 17/71 (24%)
I-set 820..913 CDD:254352 29/102 (28%)
Ig 838..920 CDD:299845 26/91 (29%)
FN3 917..1033 CDD:238020 19/118 (16%)
FN3 1040..1142 CDD:238020 3/5 (60%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Ceacam2NP_001106839.1 Ig_CEACAM_D1 36..140 CDD:143251 26/111 (23%)
Ig 146..235 CDD:299845 20/102 (20%)
IG_like 157..221 CDD:214653 14/76 (18%)
Ig_2 242..320 CDD:290606 19/86 (22%)
IG_like 246..320 CDD:214653 18/82 (22%)
Ig 322..412 CDD:299845 29/101 (29%)
IG_like 333..412 CDD:214653 27/90 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..520 17/56 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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