DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and rig-4

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:2471 Identity:487/2471 - (19%)
Similarity:817/2471 - (33%) Gaps:756/2471 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LEPPCLVLEKAL--------------LLGALLLAVLATP-LLATSGLRVPTFLLEPAPRLLFGND 53
            :.||.:|..|.|              ..|.....||..| |||:..|.:....::         |
 Worm   104 ISPPSMVRSKYLDDFDASDESVQYEVTTGVGRYFVLRRPTLLASRNLDISYSWIK---------D 159

  Fly    54 TGAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRA 118
            ...|||       |....:|..||:|.  |.|::                  |.|.  ..|:..|
 Worm   160 DSHQVT-------PDATHFVTSDGNLV--VTGVK------------------RDDF--GAYKLMA 195

  Fly   119 SNEAGTVLSRNVQVHAVVRRQFHVH-------VENT-------------EVYLGNSALIKCAIPE 163
            |::         .:..:|.::::|.       ::||             |..|.:..:..|....
 Worm   196 SSD---------DLKEIVSKEYNVRDNGLSPSLQNTLSIVYFPTDRTIIESTLPHDEIFDCVTSF 251

  Fly   164 YVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGERQ 228
            ..:..||:..:..|::|                 ||        ||.|:       |.|||..|.
 Worm   252 GSKDDVRIRWFLNGQQI-----------------SG--------SEVGM-------TTTLNNRRL 284

  Fly   229 -----------------RSDAVMLQVKELSKNLAPRTTQKPVM-----EIHVERGNDVHLPCNIQ 271
                             |:||.|.:..: .|:.......:|::     ||....|:.:.|.|:::
 Worm   285 IISNPSSFTRGEHKLECRADAAMGRTSD-QKSAYMTFISRPILKDLPNEIQKTVGSSLSLKCSVK 348

  Fly   272 GNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLS 336
            ........||:           :...:...|..|.|....:.|.|.:.|:|:|..|.....:   
 Worm   349 KKSSMDIKWYK-----------NGLMMTTQRGKLTIDRIKQDDFGLYQCEATNAAGADLASV--- 399

  Fly   337 VNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSS 401
                                                 |:..|   :||..:.|.........:..
 Worm   400 -------------------------------------WVKEG---EANETVATEMSEDGMSLEEE 424

  Fly   402 LLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPG-PLISLKCSASGS 465
            :.::....|....:    :|.::..|........:...:||.|..:..|..| ..|.::|:|:||
 Worm   425 ISMETPPPRKLKFF----DNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGS 485

  Fly   466 PPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQH 530
            |||...|||:...|...::.:        |::.|   .|.|..:|..|.|.|.|..|.|  :|:.
 Worm   486 PPPNIIWLLNGHEIQTDNVKY--------DLTND---GLAIHDIRKSDEGEYTCEISGS--NVKA 537

  Fly   531 SARLNVYGPPYVRAIGPI--KAVAGEDIIVHCPFAGYPVEQ--IRWEKAHQELTTSNHYEL-ASV 590
            :|.:.|.|...:. .||.  |::.|.::...|..|...|.:  :.|......|..:.:..| .|.
 Worm   538 TANVQVNGDSLIE-YGPADQKSLIGTNVEFSCEVAKEYVRKASVEWYLNDVLLPVNGNSGLRISR 601

  Fly   591 ADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFK-------FPKNLQ-- 646
            ...|.|:|:.|.|. :.|.|.|.|.....||....|...:..|.:.|..:       .|..::  
 Worm   602 NRKGSLIIRQVGPD-NTGEYRCRVTVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVR 665

  Fly   647 -----EGGRAQITCAV---SSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSG 703
                 :|....|..|:   :.|...::..|.....:||        |||               |
 Worm   666 WNEGFDGNEPIIKHAIEMRTMGPTGLWSDWTTAIDNIP--------KEE---------------G 707

  Fly   704 KYTCYASNAAAKVNYTAELQV-------------------------RVAPR-------------- 729
            |..|:......:.:.|||.:|                         ..|||              
 Worm   708 KPCCWTDIEDLRPSSTAEFRVVASNKHGPGKPSLPSYSVTMPQQPPSAAPRNVAASARSPHSVMV 772

  Fly   730 -WRY--EPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDND 791
             |:.  |.:|:..:||..  :.....||  .::||      ..|:......|| :|:..|.|..:
 Worm   773 QWQQPKEELDSGDVLGYV--VRYRLAGY--SSLTW------NEKNLTTKDARN-TLVDELITWRE 826

  Fly   792 EGYYMCQ--ATNEIGAGL-----------------KKTIRINV---------------------- 815
               |..|  |.|:.|.|:                 .|.:|:.|                      
 Worm   827 ---YEIQVAAYNKRGLGVFSESIEVTTSEGRPTQAPKNVRVKVLNSTAVAIEFTAPEQQRIPGVN 888

  Fly   816 ---------NEPAR--------FEQSARNISSRRND--------PVTLDCHAKGDEP-------- 847
                     .||.:        .:...|.:::..|:        ..||.....||.|        
 Worm   889 LGYKVQFWKGEPEKGELYKQVILDPDRRQLTTVVNELEKFGHYNLTTLCFTTPGDGPRSNVVKVV 953

  Fly   848 ---------------------ITIGWT---QNNG---RIDLNNFRFSIAEMKTEKGVDSQLT--- 882
                                 ..|.|.   :.||   :..:.::..|..::||:..||...|   
 Worm   954 TEEDTPESVDELSIAEVMYNGAVITWNSPLKQNGIVTKYTIRHWAASSPDVKTKHEVDGSTTNFT 1018

  Fly   883 ---IGHSDRHDSGVYRCIAENPYGRAEQIIFLA--VQERPDTPSHLEIFEVGSRTVKLSWRRPFD 942
               :..|.|:...|.....:.. |..|:..|.:  ..|.|..||.|.|.::.:.||:|.:...||
 Worm  1019 IDGLQPSTRYGVDVMASTRKGD-GPVEETKFESGVPPELPGRPSMLSIGDISATTVQLHFTPGFD 1082

  Fly   943 GNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPA 1007
            |::.:..::|:          |.:  |......||.|||.|..           .|..|.||.|.
 Worm  1083 GHTAIRQWVVE----------GKM--ADSSVFAHVFNVSAPKA-----------RSITVTGLRPF 1124

  Fly  1008 TTFLIRMQAINEIERSAYTEAI----VLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWN 1068
            |.:.:|:.|.|...|.|.:|..    .|:|..:.|::   .:..:....:.:.|:|.......||
 Worm  1125 TQYQLRLIAENVKGRGAPSEPSRSFETLQTNPDTPSQ---RLFAEPVSATSISVSWTPLLATHWN 1186

  Fly  1069 GELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGP 1133
            |:..||.: ...|..:.|:..|...:|:|        ::.|:..||.::.|.|.:.:.|.||...
 Worm  1187 GQPKGYLI-VYREIDDENWKEVRTPALRS--------SEHTVTDLRPFTSYEVNVFSENGFGRSL 1242

  Fly  1134 WSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEP--PLQFHGGIIQGYKILYRPIVHQI-- 1194
            .:.::...|.|.||..:|:|:..||..|::..|.| .|  .|..:|.:| |||:...|....:  
 Worm  1243 PTDSVKARTYESVPSGSPRNIVVTAEGSKAAIIKW-NPVAELSTNGDVI-GYKLRVVPERESLMA 1305

  Fly  1195 DFPAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGLA-SHPLFCQTDDDVPDAPAAIKAA 1258
            |....::|...|.|...:..|...::|.:.:.|||..|:|.. |.|:..:|.:|||..|.:.:.:
 Worm  1306 DETKVIDIPGQSTLMAKVSDLRPFTSYHVYMSAYTIVGNGPENSTPISFETMEDVPAPPESFQCS 1370

  Fly  1259 ALTADSILISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMVR---VDEN--GYPVTFESRSLAE 1318
            .::...:.:.||.|.:.||.|::|.:        ...|:|..|   :|..  |..:.|.:.||..
 Worm  1371 YISEQEVRMKWLPPGSPNGKITNYII--------SYWKSHEPRSMAIDAPLLGNLLMFAAMSLNP 1427

  Fly  1319 NQMYEFWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRAR 1383
            |..|.|.:.|..|.||.|........::.|.|.|.|.  ..||..:......|.:        .|
 Worm  1428 NTQYTFAIKARNSKGESEEAVAEVMTSSVRLPVRNAP--APVRDTLSQHQATEII--------IR 1482

  Fly  1384 W-------LTRD-----RPVTFSPFYEVTNEGN----------LKIHRVEGSLSGNYTCTANNLF 1426
            |       ||.|     |.|..|  |:.|||..          .|...|...||.|........|
 Worm  1483 WDESLPRKLTEDAESPVRAVQVS--YQKTNEDEWITLEKKFEYSKRRSVIKHLSPNSMFRFRIRF 1545

  Fly  1427 GSDEIQYQVIAMKP--------PSAP--QIIVQYAS---ADSIRVSWDAPDDG--GAPLQGYTIS 1476
            ..|.::   .:..|        ||||  |.|...|:   .:|:::.|..|...  .:...||.|.
 Worm  1546 IGDFLE---SSWSPESEWMRTLPSAPFAQPISLKATPYERNSVQLEWVVPHKSTWNSDAIGYRIH 1607

  Fly  1477 Y--HTAGESWSITELL-----PENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWTKGKA 1534
            |  :.:.|:|.:.|:.     .:.....::.|.....||::|...|..|.|..|..:..:. |.:
 Worm  1608 YREYPSNETWQMEEIAIRDEHEDKEEKILAKLDSFKHYILRMRIFNSEGEGPFSAPVFAYV-GYS 1671

  Fly  1535 SQAPNANELIA--TNATCVNLKLSSW-QNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEE---- 1592
            ....|.|.:|.  .:::.:.:|..:| :....:|..|.:.:.|:..     |.|.:|:.||    
 Worm  1672 IPKRNLNNIITEPLSSSSIRVKWDAWPKEDSETITSFKVRYVPVAS-----VLSSVSSEEEIMIV 1731

  Fly  1593 NRENLIFCDFLPAKWYQLRISATNDAG---------KTTEH-------YHFSTTNIDGITIPPPS 1641
            :.......|......||:.:|..|.||         ||.|.       ..||...:|.:.:....
 Worm  1732 DTNECTLNDLRKFTEYQISVSPYNRAGEGKMSQVRDKTLEDKPGPVGILRFSDVLMDSVKVSWDE 1796

  Fly  1642 VFPSENDLMNNLINSTNPTSGDWFATLIVVVIITVSIITIALTIKHRRTLCGPIAEGYESRTLPG 1706
            ......:::..::|                                           |:...:..
 Worm  1797 PSQPNGNVIGYIVN-------------------------------------------YKGYRMQE 1818

  Fly  1707 DYKEDHENRRNQQVYSASPVKTVDKGNESEMYEISPYATFSVNGG------------RTGAPAKT 1759
            ::|.:.:.|.::..:....:.      |...|..|.:|..|...|            :.|.|..:
 Worm  1819 EFKNEDQQRTSRNYFDTHGLA------EGVTYFFSVWAETSAGKGEQRSANVTIGPSKDGPPPPS 1877

  Fly  1760 PTRAVAAQTPLDYTMQFKTFGHPE---GENLNATAYPL---LPSSGFGHVKSKSSWHKQRYYNTE 1818
            ..:..:.|:.:  |:.:......:   |..|.|....:   .|::|:         ..||....|
 Worm  1878 KPQITSGQSYV--TLNWNDVADSDEIVGHLLQAKRVSVAEEAPANGY---------VSQRPRRNE 1931

  Fly  1819 DESTLSKSMTIVAGS-QAGH------SKKSNGGRSAKSSAACSGVVAGSESDTSISPSTEFSNMP 1876
            .:...|.:.|..|.| :..|      :.:...|||.|...          |...:.||:.::   
 Worm  1932 IKGAKSAAQTAAATSTRPTHPIGEWITLRPTEGRSEKEQV----------SYRELQPSSYYA--- 1983

  Fly  1877 TYRVPCKSSRSSDGRAVVD---MFRPDSSTESNND-----------------------------Q 1909
             :||..::.|.. |.|.|:   :|.|:|..:   |                             .
 Worm  1984 -FRVFTRNVRGI-GMASVETEQLFVPESIPD---DPFYTTWWFMALVAMGAFVLIVIIIAILCVT 2043

  Fly  1910 GSPAPERRHNTPRHVLGMGMAMGLGGGGGGGVGGGNGPAEKRSAGQRSRKHGSAAQQPSNQTLER 1974
            ||.|..||....|.:..:.:|.|                   :......|..|||....::.|..
 Worm  2044 GSSAKYRREKRSRSIDSLQLADG-------------------NFASFQLKGTSAANMTRSRELPT 2089

  Fly  1975 RKCPGSSNSLDSEVDAETAASLAASIAAMAGSGAGADLSG----------GFRPPAGFHDGREPG 2029
            |  ||::.|..|:...|..| ..:.:.....||...::.|          ...||          
 Worm  2090 R--PGTTQSWVSDQSREPPA-YGSVLGGSRNSGGVMNMYGLATDVIPPLPNSGPP---------- 2141

  Fly  2030 DHSDCEREQRALDLEVQRVMESTGDAQLAKMDR--------EELTSLLARYHEKKEQERLEYTIH 2086
             |:..|..|: |...|.|.:.|...|.:....|        |.:.:....|..:.|..|:||..|
 Worm  2142 -HTSVEAMQK-LSALVGRDIRSQNTAYVTPSARGGSDNGRNEYMPTRSDLYATRSEYGRVEYRGH 2204

  Fly  2087 V 2087
            :
 Worm  2205 I 2205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 15/76 (20%)
Ig 56..125 CDD:143165 15/68 (22%)
I-set 246..337 CDD:254352 17/95 (18%)
Ig 264..334 CDD:143165 13/69 (19%)
I-set 345..433 CDD:254352 8/87 (9%)
Ig 358..431 CDD:143165 8/72 (11%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 17/68 (25%)
I-set 634..724 CDD:254352 18/106 (17%)
ig 645..712 CDD:278476 13/76 (17%)
IG_like 734..815 CDD:214653 21/99 (21%)
Ig 745..815 CDD:299845 18/88 (20%)
I-set 820..913 CDD:254352 23/151 (15%)
Ig 838..920 CDD:299845 22/124 (18%)
FN3 917..1033 CDD:238020 33/119 (28%)
FN3 1040..1142 CDD:238020 20/101 (20%)
fn3 1150..1237 CDD:278470 26/91 (29%)
FN3 1263..1345 CDD:238020 23/86 (27%)
Ig 1350..1436 CDD:299845 25/107 (23%)
IG_like 1358..1436 CDD:214653 22/99 (22%)
FN3 1441..1530 CDD:238020 25/102 (25%)
FN3 1542..1620 CDD:238020 18/93 (19%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 17/122 (14%)
IGc2 338..393 CDD:197706 13/65 (20%)
I-set 459..543 CDD:254352 30/96 (31%)
IGc2 478..534 CDD:197706 22/68 (32%)
IG_like 553..639 CDD:214653 22/86 (26%)
Ig 564..635 CDD:143165 18/71 (25%)
FN3 643..747 CDD:238020 20/126 (16%)
FN3 756..850 CDD:238020 24/107 (22%)
FN3 858..954 CDD:238020 12/95 (13%)
FN3 959..1042 CDD:238020 13/83 (16%)
FN3 1057..1151 CDD:238020 32/116 (28%)
FN3 1156..1251 CDD:238020 21/106 (20%)
FN3 1258..1356 CDD:238020 28/99 (28%)
FN3 1361..1453 CDD:238020 25/99 (25%)
FN3 1464..1560 CDD:238020 23/110 (21%)
FN3 1572..1664 CDD:238020 20/91 (22%)
FN3 1679..1764 CDD:238020 18/89 (20%)
FN3 1774..1858 CDD:238020 12/132 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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