DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and let-805

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001022641.1 Gene:let-805 / 175384 WormBaseID:WBGene00002915 Length:4450 Species:Caenorhabditis elegans


Alignment Length:2210 Identity:429/2210 - (19%)
Similarity:728/2210 - (32%) Gaps:695/2210 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 TAHGSPP-----PLVTWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASN 120
            ||.|:.|     |..|   ..|....|.||..|:...|..:........|....:...|:||.: 
 Worm  1478 TARGAGPWSTEVPFQT---SAGQQNVQAPGFVKVLHTGADNAQLVWQSPYPNPGYVDKYKCRYA- 1538

  Fly   121 EAGTVLSRNVQVHAVVR-RQFHVHVENTEVYLGNSALIKCAIPEYVRP----------YVRVASW 174
            .:||...:..|..||.. :|..:..:|.......|.| .|...|.:||          :|:.:.|
 Worm  1539 PSGTQQYQERQFPAVSPCQQRQIERQNLPQSPPGSRL-HCGRIENLRPEQTYDFQVSAHVKDSGW 1602

  Fly   175 HRGEEILLPDLSDVAGRYV-------VLAASGDLYVR-SVRSEDGLMKFSCLVTNTLNGERQRS- 230
            .....   |:.:.|....|       :..:...|::. .||.:|.....:..:|.......||| 
 Worm  1603 GPYSP---PERTKVTESAVQVLFVKKIGGSENSLHINWDVRPDDKNRVTAFRITVVPQDGSQRSQ 1664

  Fly   231 ----DAVMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHLPCNIQGNPFPIFTWYRVSDSAALYP 291
                |....|.:  ..||.||||....:.....:        .:.|....:.|    :|:|||..
 Worm  1665 TFNVDRATYQYR--IDNLRPRTTYNVTVSAATHK--------EMCGGTAAVMT----TDAAALTA 1715

  Fly   292 IPSSQRVILSR-TLLLIK-NADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNS 354
            :.::.|||... |.:.|: .:..|:||.:|           :|.||                  .
 Worm  1716 LSTAPRVIAEEPTSITIEWESRNREAGGFI-----------VEYRL------------------E 1751

  Fly   355 GGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLV 419
            ||.                |....:.:.|:.:.||....:..|..:::    |..|.|.|.|   
 Worm  1752 GGA----------------WQQYARRIPAHPSQTTYTATVDGLPTNAV----VDLRVRVVSQ--- 1793

  Fly   420 ENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSL 484
            :|::::.......:...:.|    |...|.||.....:.:...|.:.|.:..|:.|.   |:|.:
 Worm  1794 QNEQSNPSPEVRARTKCSPP----TSPPQGVRVDAPSTNEVRVSWARPAKNTWMCDQ---MNVEI 1851

  Fly   485 HHRFAIG----QFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNV---YGPP-- 540
            .:|  :|    :.:.:.||...:  .....|:...:.|..|:|.:||.|.|...::   .|.|  
 Worm  1852 SYR--VGNQPEKVLTVPGDQTEY--TFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQGAPGS 1912

  Fly   541 ----YVRAIGPIK-------------AVAGEDI---IVH---CPFAGYPVEQIRWEKAHQELTTS 582
                .|:|:.|.:             .:.|.||   :.|   ||      |:...:.:...:|..
 Worm  1913 VRDLRVKALSPNEVHVQWLAPLVQRGTIVGYDISYRLKHRLACP------EEEPRDVSRDFVTVY 1971

  Fly   583 NHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRA---GEEARRDM---QLNVNSPPVIEPFKF 641
            ||.:|       ...|..:.|   ..:|...||:|.   |.|..:::   |...:|||:      
 Worm  1972 NHKDL-------DYTITGLLP---YSLYEVRVRARTTELGPEETKEVSTEQQPPSSPPL------ 2020

  Fly   642 PKNLQEGGRAQ---------ITCAVSSGDMPIY-------FSWKKDDSSI--PSSLQITEKKEEF 688
              ||:.....:         :.|:...|.:..|       ..|.|.:..|  .|.|::|......
 Worm  2021 --NLESTYALERSLSFQWEPVDCSQRHGHVVNYEYEILGQDDWAKLERQIANTSDLRVTIDGLTP 2083

  Fly   689 YSLLVFKDISARHS--GKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEA 751
            |:..|.: :.|.:|  |     ..|....|..||:.|   ||   ..|.|..:          ..
 Worm  2084 YTKYVMR-VKAYNSIGG-----GPNTENLVVMTAKAQ---AP---LPPQDLVV----------AQ 2126

  Fly   752 EGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVN 816
            ||.....::|.       ..:.|....:...:......:|:       ..|:..|:|        
 Worm  2127 EGTSFFMVSWL-------PPYPPYGPHDAYKIRYQQIPSDD-------WKEVEKGIK-------- 2169

  Fly   817 EPARFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDS-- 879
                             ||: |.|  .|:.|                 ||..    ...|:||  
 Worm  2170 -----------------DPL-LQC--PGESP-----------------RFCY----NATGLDSGQ 2193

  Fly   880 QLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDG- 943
            |..|..:.|.:.|.|     .|:  :..:|...:|..||.|..:.:.|....::.:.|..|.|. 
 Worm  2194 QFKIQVATRIEGGSY-----GPW--SSLVIANTLQVLPDAPRAIHLIEKTDHSLHIRWVPPIDPK 2251

  Fly   944 -------------------------NSPVLSYLVQYQALKYLQSHGSLAAAGG------------ 971
                                     |.|.|:||  ::.|....|:....:||.            
 Worm  2252 GYVTQYRVSIVSLDDVNDKKRTHIVNHPTLTYL--FEELNPETSYNISISAGTKQGFGREIWTRY 2314

  Fly   972 --------------------------DWN----------GHVINVSLPSTSISRSY----DSDLR 996
                                      .||          |::|.:....|.:.:..    :.|..
 Worm  2315 TTDPFNIPVVGTMPTVTPDGANALDVQWNAVLDPKNRVKGYIIEIRNSDTPVWQEIGGVTNHDAG 2379

  Fly   997 ESAI---VAGLTPATTFLIRMQAINEIER----SAYTEAIVLKTQEEAPTEAPSNVQVQTGGESE 1054
            :|..   :.||...|.:.||::.:::.:|    |...:|   :|...||...|:|:.:.:....:
 Worm  2380 KSTYFKKLTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQA---RTGCAAPLSPPTNLNLASPSNVQ 2441

  Fly  1055 LIVTWQIPPRESWNGELIGYT---VNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKY 1116
            :.|:||.|.:.||....|.|.   :|.:|.::.|:..|   ||::....|            :..
 Worm  2442 VRVSWQAPNQNSWKCSAIRYKLEYINGTEGRKQIDLPS---SSIEHLFDS------------KSN 2491

  Fly  1117 SRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQ 1181
            :::.|.||..|..||..||..:..||:||.| ...:.:........|:...| :|| :...|:|.
 Worm  2492 TKWTVRIRTENDAGSSEWSKELSITTSEGAP-GPVEGLTAKPTGPTSIVARW-KPP-RDPNGVIT 2553

  Fly  1182 GYKILYR-------------PIVHQIDFPAKLEIKRTSNLETYLHTLHKASNYSIRVLAYTATGD 1233
            ||.:.|:             ||.           |...|.|..|..|...|.|.|.|:|:|:.. 
 Worm  2554 GYTLTYQLKSIGECGPRSSTPIE-----------KHVKNEEETLEGLLPDSTYEIHVVAHTSHA- 2606

  Fly  1234 GLASHPLFCQTDDDVPDAPAA-IKAAALTADSILISWLTP--KNRNGIIS--HYTVYSREA---G 1290
            |..|..:...|::..|..|.. ::|.::|:....|:|..|  :.|||.|:  .|.::|.:.   .
 Worm  2607 GPQSSVVTVTTEEAAPTGPPQNVRAGSVTSSRADITWTQPECEQRNGKITDYEYELWSMDTWADN 2671

  Fly  1291 RKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGEG---EPTSVIAQATNTRAPAR 1352
            ..|...|..:.:|:           |.....|:..|.|....|:|   |.......|||..||:.
 Worm  2672 STGHNPTERLNLDQ-----------LIPYTQYQIRVRAINKEGDGPFSEWVPFTTSATNPPAPSD 2725

  Fly  1353 I---ASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEV----TNEGNLKIHRV 1410
            :   |:|...:                    ...||....|.....||:|    :.|.|.:..||
 Worm  2726 LQEEATFPHAI--------------------EISWLPPTPPHGNIDFYKVRYTPSGEANYREIRV 2770

  Fly  1411 EGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQY------------------------- 1450
            |   :....|:.:|  ..|.:.|::..:.|.....|.|..                         
 Worm  2771 E---TDRLECSDSN--KKDRLCYRLSDLDPEQEYDIQVSAHTEGGGWSEWSDELTSRTQQQNIPV 2830

  Fly  1451 ---------ASADSIRVSWDA-PDDGGAPLQGYTISYHTAGES--WSITELLPENNA-------- 1495
                     .:::||.:.|:. |.|....:.||.:.:.:..::  |.      |.|.        
 Worm  2831 LERELEVTDKTSNSISLKWEGLPQDQATHVVGYVLEFKSEDDNAEWQ------EYNGVVKHRKTS 2889

  Fly  1496 ----FTISGLKCGNQYIIKMSAHNMVGS----GVASEEINVWTK-GKASQAPNANELIATNATCV 1551
                .|:..|:....|..::   .:||.    |....|....|. ||....|.:.:|.:.:...:
 Worm  2890 SDYKITVKQLETATLYFFRL---RVVGKNDKRGQPGPETKETTSCGKPEAPPESLKLESLDFETL 2951

  Fly  1552 NL-----KLSSWQNGGCSIHHFSIEH-RPLGDIRWTVVTSDISNAEENRENLIFCDFLPAKW-YQ 1609
            .:     :.|:|:   |....:.|:. .......|||.|...|       .||.......|| .:
 Worm  2952 KITWTPPEESTWR---CDNVEYLIDFVNTTSRGNWTVSTDAPS-------ELIVPTQPGTKWDVK 3006

  Fly  1610 LRISATNDAGKT-----TEHYHFSTTNIDG---ITIPPPS--------VFPSENDLMNNLINSTN 1658
            :|.....|:||.     ::....:|.::.|   :|:.|..        ..|.::...|..::.|.
 Worm  3007 IRTQTVEDSGKPQASRWSDRVSITTQSLPGEIFVTVEPKGPREALVTWELPDKDQKWNYGVDITY 3071

  Fly  1659 -----------PTSGDWFATLIVV-----------------VIIT--------VSIITIALTIKH 1687
                       .|......||:.|                 |.:|        .||:| ..|::.
 Worm  3072 KLKQLGGCNEVQTGAKEPVTLLNVQEKQIPLENLQPGSLYEVSVTPRRPPSLHSSIVT-PKTVRT 3135

  Fly  1688 RRTL----CGPIAEGYESRTLPGDYKEDHE------------NRRNQQVYSASPVKTVDKGNESE 1736
            .||.    .||      .:.|....::|.|            ...|...|....| .:|:.||..
 Worm  3136 FRTKNDVPTGP------PQNLQSTVRKDSELGFKWDAPECIQQNGNITQYEFELV-GLDEWNEGT 3193

  Fly  1737 MYEISPYATFSVNGGRTGAPAKTPTRAVAAQTPLDY--TMQFKTFGHPEGENLNATAYPLLPSSG 1799
            ...::|.....::..:.|:..:...||..|:.|..:  :::.:|.|...|.....||        
 Worm  3194 REGVTPRQNTLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGSELGPPRELTA-------- 3250

  Fly  1800 FGHVKSKS-----SW------------HKQRYYNTEDESTLSKSMTIVAGSQAGHSKKSNGGRS- 1846
               |::|:     :|            ::.||....|:|..::.      ..:|.....:|.:| 
 Worm  3251 ---VQTKATQIQLTWLPPYPEKAIVTAYRIRYSPRADDSNPTEV------ELSGDDLTCSGYKSP 3306

  Fly  1847 -AKSSAACSGVVAGSESDTSISPSTEFSNMPTYR--VPCKSSRSSDGRAVVDMFRPDSSTESNND 1908
             ..|:..|:.:       ..:.|||      |||  |..:||..:.|....|.|    ||..|:|
 Worm  3307 IITSANLCATI-------KGLQPST------TYRFAVQGQSSSGNWGEWSSDYF----STTRNDD 3354

  Fly  1909  1908
             Worm  3355  3354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 19/76 (25%)
Ig 56..125 CDD:143165 17/68 (25%)
I-set 246..337 CDD:254352 22/92 (24%)
Ig 264..334 CDD:143165 16/71 (23%)
I-set 345..433 CDD:254352 13/87 (15%)
Ig 358..431 CDD:143165 11/72 (15%)
Ig 456..533 CDD:143165 18/80 (23%)
IGc2 553..619 CDD:197706 17/74 (23%)
I-set 634..724 CDD:254352 21/109 (19%)
ig 645..712 CDD:278476 15/86 (17%)
IG_like 734..815 CDD:214653 10/80 (13%)
Ig 745..815 CDD:299845 8/69 (12%)
I-set 820..913 CDD:254352 18/94 (19%)
Ig 838..920 CDD:299845 19/83 (23%)
FN3 917..1033 CDD:238020 31/200 (16%)
FN3 1040..1142 CDD:238020 25/104 (24%)
fn3 1150..1237 CDD:278470 23/99 (23%)
FN3 1263..1345 CDD:238020 19/91 (21%)
Ig 1350..1436 CDD:299845 18/92 (20%)
IG_like 1358..1436 CDD:214653 15/81 (19%)
FN3 1441..1530 CDD:238020 19/141 (13%)
FN3 1542..1620 CDD:238020 16/84 (19%)
let-805NP_001022641.1 fn3 30..110 CDD:278470
fn3 143..212 CDD:278470
fn3 241..310 CDD:278470
FN3 438..530 CDD:238020
FN3 1007..1094 CDD:238020
FN3 1115..1195 CDD:238020
FN3 1205..1293 CDD:238020
fn3 1299..1386 CDD:278470
FN3 1400..1493 CDD:238020 5/14 (36%)
FN3 1502..1613 CDD:238020 24/115 (21%)
fn3 1629..1696 CDD:278470 16/68 (24%)
FN3 1720..1808 CDD:238020 25/139 (18%)
FN3 1815..1905 CDD:238020 21/96 (22%)
FN3 1910..1997 CDD:238020 20/102 (20%)
FN3 2017..2100 CDD:214495 19/96 (20%)
FN3 2116..2219 CDD:238020 29/185 (16%)
FN3 2224..2307 CDD:214495 16/84 (19%)
FN3 2322..2420 CDD:238020 15/100 (15%)
fn3 2427..2510 CDD:278470 23/97 (24%)
FN3 2522..2617 CDD:238020 25/109 (23%)
FN3 2624..2715 CDD:238020 22/101 (22%)
FN3 2720..2823 CDD:238020 22/127 (17%)
FN3 2833..2929 CDD:238020 17/104 (16%)
FN3 2937..3011 CDD:214495 16/83 (19%)
FN3 3040..3129 CDD:238020 13/88 (15%)
FN3 3145..3237 CDD:238020 17/98 (17%)
FN3 3243..3350 CDD:238020 28/140 (20%)
fn3 3368..3436 CDD:278470
fn3 3460..3550 CDD:278470
fn3 3567..3639 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I8020
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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