DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and rig-6

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001022014.1 Gene:rig-6 / 173828 WormBaseID:WBGene00016354 Length:1196 Species:Caenorhabditis elegans


Alignment Length:1300 Identity:265/1300 - (20%)
Similarity:429/1300 - (33%) Gaps:430/1300 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 HRGEE-------ILLPDLSDVAGRYVVLAAS------GDLYVRSVRSEDGLMK-----------F 215
            |.|.|       :||.|:.|:.........|      |.:.....|:|||..|           |
 Worm    56 HEGGELMDTSVTLLLEDVMDLLKNLHENGLSEPTFHVGGMGQALNRTEDGNYKIITINPSSHFPF 120

  Fly   216 SCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVMEIHVERGND---VHLPCNIQGNPFPI 277
            .|    :||...:||  ::.|.|.|... ||:.:.....||:....:|   :.|||.:||||.|.
 Worm   121 IC----SLNKMARRS--LLFQQKLLPVG-APQISLTGQSEIYFHPRHDADYIALPCTVQGNPKPT 178

  Fly   278 FTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVS 342
            ..||: :|...|.|..|:...:||...||:..:.......:.|.|.|..||.|....|...|::.
 Worm   179 VAWYK-NDVEVLSPSMSNVSYLLSGGNLLVPASSTLAYSSFHCTARNSLGEVRSPPILLKPSFID 242

  Fly   343 VHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNI------RFLS-KS 400
            .....::.:        ::..|.|:.:|.....|..|.|..:....:..|.|      :|:| ..
 Worm   243 PFRPHRLDV--------YSLATGGAKLDCDAPAHQPKSLTYSWLYGSSTDRILSQNERKFISLDG 299

  Fly   401 SLLVQNVGRRDRGVYQC-----------------LVENQRASAQAMAELKLGDTVPELIYTFIEQ 448
            :|....|...|...|.|                 |:.:......:....||..|.|::    ..:
 Worm   300 TLFFSYVTAEDEDSYACSLSVYSTQSGHYGPFFRLISSTPKLVNSTFPPKLDSTQPQI----FPE 360

  Fly   449 NVRPGPLISLKCSASGSPPPQFAW-LLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPD 512
            :.:.|..|.|:|.|..||.||:.| .:|.:||...|         .:...|.|   |.|..|...
 Worm   361 DPKVGDSIYLECFAYASPLPQYKWSRVDGKPIPARS---------HISNYGRV---LKIEKVNYG 413

  Fly   513 DGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQ 577
            |.|.|||||.|:.||......:.:..||.:.                                  
 Worm   414 DAGKYKCVAMNAFGSAAGEVHVKLRAPPSIL---------------------------------- 444

  Fly   578 ELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFP 642
                                         ||::..:|.:.:          ||:           
 Worm   445 -----------------------------QGLHDRLVPTES----------NVS----------- 459

  Fly   643 KNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEF---YSLLVFKDISARHSGK 704
                      ..|.:|:.|......|.||...|...|...||::..   :::|..|......||.
 Worm   460 ----------FECLLSNADSYSSVEWFKDAKPIVPLLLPAEKRKRLKIDHNVLHLKFADETDSGV 514

  Fly   705 YTCYASNAAAKVNYTAELQVR-VAPRWRYEPMDTAIM--LGNTISINCEAEGYPIPTITWFKGQG 766
            |.|.|||.....:.:|.|.|: .||.:....|...:.  .|:|:||.|..|..|       :..|
 Worm   515 YQCVASNDVGSSSSSALLTVKDSAPVFPPNAMSRKVFAAFGSTVSIPCIFEASP-------RFHG 572

  Fly   767 K-----GSKDFKPLSMRNHSLLLNL--ATDNDEGYYMCQATNEIGAGLKKTIRINVNEPA----R 820
            |     |||..:...:|:...::::  ....|.|.:.|.|.|::|....:...|.||:|:    .
 Worm   573 KWADAGGSKLPQKGRIRDEEGVISIEKVLHEDAGLFFCTAHNKLGKAHAQVQLIVVNKPSIKTNF 637

  Fly   821 FEQSARNISSRRNDPVTLDCHAKGDEPITI-GWTQNNGRI-DLNNFRFSIAEMKTEKGVDSQLTI 883
            .::...|:|..    |.|.|....:.|..: .|..|:... :..:.:..:.|.|:          
 Worm   638 LDEETVNMSCE----VELTCENSAECPEALFEWKINDRPAKEYPSLKSKVHEKKS---------- 688

  Fly   884 GHSDRH-----DSGVYRCIA----------ENPYGRAEQIIFLAVQERPDTPSHL-----EIFEV 928
            ||..||     |..|.:.:|          .:.||.:.:.:     .:|..||.:     ::.|.
 Worm   689 GHKGRHLKQKVDLEVPKSLAGSRQIGRFACSSLYGGSSEFV-----TKPQLPSPIALTVEQMDED 748

  Fly   929 G--SRTVKLSWRRP------FDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPST 985
            |  .:..:|.||.|      .|.:..|..|||:.:..|           ...|            
 Worm   749 GKKKKMFRLRWRLPPQHRDTRDHSPKVEGYLVELRTRK-----------NRKW------------ 790

  Fly   986 SISRSYDSDL-----RESAIVAGLTPATTFLIRMQAINEIERSAYTEAIV----LKTQEEAPTEA 1041
               |:.:..|     ::|..|..|.|.|.:..|   :..:|.:|..|..:    :||...||:|.
 Worm   791 ---RAAERQLVGNMEKDSITVENLLPNTEYQFR---VRSVESAAIGEPSIPSDWVKTAPGAPSET 849

  Fly  1042 PSNVQVQTGGESELIVTWQ------------IPPRESWNGELIG--------------------- 1073
            ..|::.::.....|:|.||            :..|.||:...:|                     
 Worm   850 IDNLKWRSLDSQTLLVEWQPIEIGQESSGDNLRYRVSWSEATVGKNATDDMKLSNQDDDFENHLD 914

  Fly  1074 -------YTVNCSE----------------------------------EKQNINFISVVNSS--- 1094
                   ..:|.:|                                  :|.:::.:..:|:|   
 Worm   915 SDQPQAILKLNTTEGCRMVVLAVRPVNDQGNGSVGTDTIAFLNSHGELKKVSLHNVKPINASHVN 979

  Fly  1095 ----------------------------LKSTIVSG---WATTKATLRGLRKYSRYAVTIRAMNS 1128
                                        :.:|:.|.   |     .|.||...:.|...::|:::
 Worm   980 ISWTWDNTSDCDTKHAVQITCINLSGSEISATVASDRIFW-----MLGGLEAETAYDCDLKAIDN 1039

  Fly  1129 FGS-GPWSAAIFGTTAEGVPEAAP----------QNVNCTALSSQSLKISWLEPPLQFHGGIIQG 1182
            .|| ||.|......|.:..|...|          ::...|.|...|::   |:.|.:...|.  |
 Worm  1040 HGSFGPASKKFRIHTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSIE---LQKPNRTENGC--G 1099

  Fly  1183 YKI-LY----RPIVHQIDFPAKLEIKRTS---NLETYLHTLHKASNYSIRVLAYTATGDGLASHP 1239
            ||| :|    .....::|.|    ::|.|   |....|..|.....|:|:|..|...|.|..|.|
 Worm  1100 YKIFIYISETATEAIELDMP----LQRLSDRRNPSARLDGLKLMYMYTIKVAGYNPGGIGPISEP 1160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 29/93 (31%)
Ig 264..334 CDD:143165 24/69 (35%)
I-set 345..433 CDD:254352 16/111 (14%)
Ig 358..431 CDD:143165 16/96 (17%)
Ig 456..533 CDD:143165 28/77 (36%)
IGc2 553..619 CDD:197706 3/65 (5%)
I-set 634..724 CDD:254352 21/92 (23%)
ig 645..712 CDD:278476 18/69 (26%)
IG_like 734..815 CDD:214653 21/89 (24%)
Ig 745..815 CDD:299845 18/76 (24%)
I-set 820..913 CDD:254352 19/109 (17%)
Ig 838..920 CDD:299845 17/98 (17%)
FN3 917..1033 CDD:238020 27/137 (20%)
FN3 1040..1142 CDD:238020 28/210 (13%)
fn3 1150..1237 CDD:278470 25/104 (24%)
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
rig-6NP_001022014.1 Ig 153..237 CDD:299845 28/84 (33%)
Ig 240..335 CDD:299845 15/102 (15%)
Ig 358..427 CDD:299845 27/80 (34%)
IG_like 363..436 CDD:214653 29/84 (35%)
I-set 441..534 CDD:254352 27/186 (15%)
IGc2 456..524 CDD:197706 21/98 (21%)
I-set 547..627 CDD:254352 19/86 (22%)
Ig 552..627 CDD:299845 19/81 (23%)
FN3 737..839 CDD:238020 24/130 (18%)
fn3 970..1047 CDD:278470 14/81 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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