DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and Dscam

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_038943864.1 Gene:Dscam / 171119 RGDID:619992 Length:2034 Species:Rattus norvegicus


Alignment Length:2076 Identity:637/2076 - (30%)
Similarity:972/2076 - (46%) Gaps:225/2076 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEA 112
            ::|.:.:|..|.|.|.|.||..:.|.|..|.....|||:|.:..||||...||....:.|.:|:.
  Rat    34 VVFASTSGTLVPCPAAGIPPVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDN 98

  Fly   113 TYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRG 177
            ||.|.|.|.:|.:.|::|.:.||:|..:.|.||:.:...||.|:.||.||..|..||.|.||.: 
  Rat    99 TYYCTAENPSGKIRSQDVHIKAVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEK- 162

  Fly   178 EEILLPDLSDVAGRYVVLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSK 242
                 ..:|.|:|...::.::|.||::.|::||||..:.|:..:...||.::|::..|.|.:   
  Rat   163 -----DTVSLVSGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSD--- 219

  Fly   243 NLAPRTTQKPVMEIHVER----GNDVHLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRT 303
               |..:...:::....|    |..|.|||...|:|.|.:.|.:.:     .|:..|.|...:.|
  Rat   220 ---PANSAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDN-----MPLELSGRFQKTVT 276

  Fly   304 LLLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSA 368
            .|||:|:...|:|.::|:.||::|..::..||.|...:...|.|:....:.|...:.:|:.||:.
  Rat   277 GLLIENSRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGNE 341

  Fly   369 IDAIDWLHNGKPLQ-ANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAEL 432
            ...:.|..||:.|. ..|...||      |:.::|::.::.:.|.|.|||.|...:.|||...::
  Rat   342 DQELSWYRNGEILNPGKNVRITG------LNHANLIMDHMVKSDGGAYQCFVRKDKLSAQDYVQV 400

  Fly   433 KLGDTVPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMS 497
            .|.|..|::|..|.|:.|.|...:||.|:..|:|.|...|.||..||:..|.|.   |.|.:...
  Rat   401 VLEDGTPKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHR---ISQMITSE 462

  Fly   498 GDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPF 562
            |:|:|:||||..:..|||:|:|.|:||.|.|.:.||:||.||..:|.:..|.|:||.|..:||..
  Rat   463 GNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGRDTYIHCRV 527

  Fly   563 AGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQ 627
            .|||...|:|.| :..|...||.::| ..:.|.|.:.:|:...|:|.|||.|..:......:.:.
  Rat   528 IGYPYYSIKWYK-NANLLPFNHRQVA-FENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVH 590

  Fly   628 LNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLL 692
            :.|..||.|:||:||: ...|.|..|.|.|.|||:||..:|:||...||:||.:|....:|.|.|
  Rat   591 VTVKVPPFIQPFEFPR-FSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSSL 654

  Fly   693 VFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIP 757
            ...::|..|:|.|||.|.|.||.|.:.::|.|||.|::..:|.|...:.|..:.:||.|||||:|
  Rat   655 RISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVP 719

  Fly   758 TITWFKGQGKGSKDFKPLSMR-------NHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINV 815
            ||.|...:|.|...|:|:::.       |.|||:....:.|.|||:|:.:|::||.:.|::.:.|
  Rat   720 TIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTV 784

  Fly   816 NEPARFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDSQ 880
            ..||..........:.:.....:.|.|.|::||.:.|.:.:..|:....|:.::..:..:.|.|.
  Rat   785 KIPAMITSYPNTTLATQGQRKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVIST 849

  Fly   881 LTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNS 945
            |.|..:.|.|||.:.|.|.|.||....||.|.|||.|| |..:||.:|.:||:.|.|...|||||
  Rat   850 LQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD-PPEIEIKDVKARTITLRWTMGFDGNS 913

  Fly   946 PVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYD-SDLRESAIVAGLTPATT 1009
            |:..|.::.:                       |.|....|..|:.| |....||.:..:.|::|
  Rat   914 PITGYDIECK-----------------------NKSDSWDSAQRTKDVSPQLNSATIIDIHPSST 955

  Fly  1010 FLIRMQAINEIERSAYTEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGY 1074
            :.|||.|.|.|.:|..:..|.:...|.||...|..|.::......:.|||:.|.:...||.:.||
  Rat   956 YSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGY 1020

  Fly  1075 TVNCSEEKQNINF---ISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWSA 1136
            .:...|.....||   |..::::..|.:.        ||..|.|:::|.:.::|.|..|:||.|.
  Rat  1021 QIGYREYSTGGNFQFNIISIDTTGDSEVY--------TLDNLNKFTQYGLVVQACNRAGTGPSSQ 1077

  Fly  1137 AIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKL- 1200
            .|..||.|.||...|:||...|.|.:|:.|||.....:...||:||::::|  ..:.||  .:| 
  Rat  1078 EIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY--WANLID--GELG 1138

  Fly  1201 EIKRTSNLETYLHT--LHKASNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTAD 1263
            |||..:..:..|..  |.|.:||||:|||:|..|||:.|..:|.:|.:|||..||.:||||.:|.
  Rat  1139 EIKNVTTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASAS 1203

  Fly  1264 SILISWLTPKNRNGIISHYTVYSREAGRKGQAKTH---MVRVDENGYPVTFESR--SLAENQMYE 1323
            .:.:|||.|...||||..|||:.          :|   .|..:....|.:|..|  :|:.|:.|.
  Rat  1204 MVFVSWLPPLKLNGIIRKYTVFC----------SHPYPTVISEFEASPDSFSYRIPNLSRNRQYS 1258

  Fly  1324 FWVSASTSVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWL--T 1386
            .||.|.||.|.|..:.:|......:|||||.:|...|.......:||.|.|||:|:|..:|:  :
  Rat  1259 VWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKDIVLPCKAVGDPSPAVKWMKDS 1323

  Fly  1387 RDRP--VTFSPFYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQ 1449
            ...|  ||......:.:.|:..|..|:...||.|:|.|||.:|||||...:....||..|::.|.
  Rat  1324 NGTPSLVTIDGRRSIFSNGSFVIRTVKAEDSGYYSCVANNNWGSDEIILNLQVQVPPDQPRLTVS 1388

  Fly  1450 YASADSIRVSWDAPDDGGAPLQGYTISY-HTAGESWSITELLPENNAFTISGLKCGNQYIIKMSA 1513
            ..::.||.:||...|:||:.::||.:.| ....|.|....:.|...::.:..||||..|...::|
  Rat  1389 KTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTA 1453

  Fly  1514 HNMVGSGVASEEINVWTKGKASQAPNANELIAT-NATCVNLKLSSWQNGGCSIHHFSIEHRPLGD 1577
            .|.||.|..||.|...|.||..|.....||.|: |.|.|.|.|..|.:|||.|..|::|:||.|.
  Rat  1454 QNGVGPGRISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLIGWNDGGCPITSFTLEYRPFGT 1518

  Fly  1578 IRWTVV-TSDISNAEENRENLIFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPP-- 1639
            ..||.. .:.:|      ::.|..|...|.||:|::...|.||...:..:|:|.|.||.||||  
  Rat  1519 TVWTTAQRTSLS------KSYILYDLQEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIPPLI 1577

  Fly  1640 PSVFPSENDLMNNLINSTNPTSGDWFATLIVVVIITVSII---TIALTIKHRRTL--------CG 1693
            .||..||..|          |:.:....|:.:..|.|.::   .:.|.::.||..        ..
  Rat  1578 KSVVQSEEGL----------TTNEGLKILVTISCILVGVLLLFVLLLVVRRRRREQRLKRLRDAK 1632

  Fly  1694 PIAE---GYESRTLPGDYKEDHENRRNQQVYSA-------SPVKTVDK-----------GNESEM 1737
            .:||   ...:||.....|:....|.:..:..|       ..::|:|.           |..::.
  Rat  1633 SLAEMLMSKNTRTSDTLSKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDADFGEAAKQ 1697

  Fly  1738 ----------YEISPYAT---FSVNGGRTGAPAKTPTRAVAAQTPLD-YTMQFKTFGHPE---GE 1785
                      |:....||   ..|:..|.|....|...|.|..|..: |..|: |...|.   ..
  Rat  1698 KSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRNAKAGPTARNRYASQW-TLNRPHPTISA 1761

  Fly  1786 NLNATAYPLLPSSGFGHVKSKSSWHKQRYYNTEDE------STLSKSMTIVAGSQA-GHSKKSNG 1843
            :...|.:.|......|.|..:|..:........|.      ||.|.|.|....::| .|:|....
  Rat  1762 HTLTTDWRLPTPRATGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQ 1826

  Fly  1844 GRSAK--------SSAACSGVVAGSESDTSISPSTEFSNMPTYRVPCKSSRSSDGRAVVDMFRPD 1900
            .|.||        |..:...:.||:...|....|:..|.....|......:..||..||:|..|.
  Rat  1827 LRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPPKPQDGGRVVNMAVPK 1891

  Fly  1901 SSTESNNDQGSPAPERRHNTPRHVLG----------MGMAMGLGG-GGGGGVGGGNG-------- 1946
            :.......:.|.:..:..:.|...||          |...:..|. |....:..|..        
  Rat  1892 AHRPVLETRSSKSRHQLTHVPLRALGDLIHLPPYLRMDFLLNRGAPGTSRDLSLGQACLEPQKSR 1956

  Fly  1947 -----------PAEKRSA------GQRSRKHGSAAQQPSNQTLERRKCPGSSNSLDSEVDA 1990
                       |.|..|:      ||:|.:.|:.|..|..:..|..:....|:|.:|.:|:
  Rat  1957 TLKRPTVLEPTPMEASSSTSSTREGQQSWQQGAVATLPQREGAELGQAAKMSSSQESLLDS 2017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 29/76 (38%)
Ig 56..125 CDD:143165 27/68 (40%)
I-set 246..337 CDD:254352 27/94 (29%)
Ig 264..334 CDD:143165 22/69 (32%)
I-set 345..433 CDD:254352 24/88 (27%)
Ig 358..431 CDD:143165 21/73 (29%)
Ig 456..533 CDD:143165 32/76 (42%)
IGc2 553..619 CDD:197706 23/65 (35%)
I-set 634..724 CDD:254352 39/89 (44%)
ig 645..712 CDD:278476 28/66 (42%)
IG_like 734..815 CDD:214653 31/87 (36%)
Ig 745..815 CDD:299845 28/76 (37%)
I-set 820..913 CDD:254352 24/92 (26%)
Ig 838..920 CDD:299845 29/81 (36%)
FN3 917..1033 CDD:238020 35/116 (30%)
FN3 1040..1142 CDD:238020 27/104 (26%)
fn3 1150..1237 CDD:278470 34/89 (38%)
FN3 1263..1345 CDD:238020 27/86 (31%)
Ig 1350..1436 CDD:299845 33/89 (37%)
IG_like 1358..1436 CDD:214653 28/81 (35%)
FN3 1441..1530 CDD:238020 29/89 (33%)
FN3 1542..1620 CDD:238020 29/79 (37%)
DscamXP_038943864.1 Ig 26..121 CDD:416386 31/86 (36%)
Ig strand A' 33..37 CDD:409353 0/2 (0%)
Ig strand B 40..49 CDD:409353 3/8 (38%)
Ig strand C 55..61 CDD:409353 1/5 (20%)
Ig strand C' 63..66 CDD:409353 1/2 (50%)
Ig strand D 72..75 CDD:409353 1/2 (50%)
Ig strand E 80..85 CDD:409353 2/4 (50%)
Ig strand F 98..106 CDD:409353 4/7 (57%)
Ig strand G 109..121 CDD:409353 3/11 (27%)
Ig 125..210 CDD:416386 30/90 (33%)
Ig strand A 126..130 CDD:409353 1/3 (33%)
Ig strand A' 132..136 CDD:409353 0/3 (0%)
Ig strand B 139..149 CDD:409353 5/9 (56%)
Ig strand C 157..163 CDD:409353 3/11 (27%)
Ig strand C' 164..167 CDD:409353 0/2 (0%)
Ig strand E 179..185 CDD:409353 3/5 (60%)
Ig strand F 191..201 CDD:409353 3/9 (33%)
IGc2 239..300 CDD:197706 22/65 (34%)
Ig strand B 242..246 CDD:409353 2/3 (67%)
Ig strand C 255..259 CDD:409353 0/3 (0%)
Ig strand F 290..295 CDD:409353 1/4 (25%)
Ig 313..395 CDD:416386 22/87 (25%)
Ig strand A 314..319 CDD:409353 0/4 (0%)
Ig strand A' 322..326 CDD:409353 0/3 (0%)
Ig strand B 329..339 CDD:409353 1/9 (11%)
Ig strand C 344..350 CDD:409353 1/5 (20%)
Ig strand C' 351..354 CDD:409353 1/2 (50%)
Ig strand E 368..374 CDD:409353 1/5 (20%)
Ig strand F 381..389 CDD:409353 5/7 (71%)
Ig 406..501 CDD:416386 40/97 (41%)
Ig strand A 406..409 CDD:409353 1/2 (50%)
Ig strand A' 415..419 CDD:409353 1/3 (33%)
Ig strand B 422..431 CDD:409353 3/8 (38%)
Ig strand C 436..442 CDD:409353 2/5 (40%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 3/10 (30%)
Ig strand E 464..473 CDD:409353 5/8 (63%)
Ig strand F 480..488 CDD:409353 4/7 (57%)
Ig strand G 491..501 CDD:409353 4/9 (44%)
Ig 504..593 CDD:416386 28/90 (31%)
Ig strand A 505..507 CDD:409353 0/1 (0%)
Ig strand A' 512..516 CDD:409353 1/3 (33%)
Ig strand B 519..526 CDD:409353 2/6 (33%)
Ig strand C 533..539 CDD:409353 2/5 (40%)
Ig strand C' 540..542 CDD:409353 0/1 (0%)
Ig strand D 549..553 CDD:409353 1/4 (25%)
Ig strand E 557..563 CDD:409353 2/5 (40%)
Ig strand F 571..579 CDD:409353 5/7 (71%)
Ig strand G 583..593 CDD:409353 0/9 (0%)
Ig 596..686 CDD:416386 40/90 (44%)
Ig strand A 597..599 CDD:409353 1/1 (100%)
Ig strand B 611..620 CDD:409353 3/8 (38%)
Ig strand C 625..632 CDD:409353 3/6 (50%)
Ig strand C' 634..636 CDD:409353 0/1 (0%)
Ig strand D 643..648 CDD:409353 1/4 (25%)
Ig strand E 651..658 CDD:409353 2/6 (33%)
Ig strand F 665..673 CDD:409353 5/7 (71%)
Ig strand G 676..685 CDD:409353 2/8 (25%)
Ig_DSCAM 689..784 CDD:409397 32/94 (34%)
Ig strand B 707..711 CDD:409397 0/3 (0%)
Ig strand C 720..724 CDD:409397 2/3 (67%)
Ig strand E 749..753 CDD:409397 2/3 (67%)
Ig strand F 763..768 CDD:409397 3/4 (75%)
Ig strand G 777..780 CDD:409397 1/2 (50%)
Ig_DSCAM 785..884 CDD:409398 27/98 (28%)
Ig strand B 805..809 CDD:409398 0/3 (0%)
Ig strand C 818..822 CDD:409398 0/3 (0%)
Ig strand E 848..852 CDD:409398 2/3 (67%)
Ig strand F 862..867 CDD:409398 1/4 (25%)
Ig strand G 875..878 CDD:409398 0/2 (0%)
FN3 885..978 CDD:238020 35/116 (30%)
FN3 986..1083 CDD:238020 27/104 (26%)
FN3 1091..1184 CDD:238020 36/96 (38%)
FN3 1189..1278 CDD:238020 35/98 (36%)
Ig_3 1287..1363 CDD:404760 24/75 (32%)
Ig strand B 1303..1307 CDD:409353 2/3 (67%)
Ig strand C 1316..1320 CDD:409353 0/3 (0%)
Ig strand E 1342..1346 CDD:409353 1/3 (33%)
Ig strand F 1356..1361 CDD:409353 2/4 (50%)
FN3 1380..1470 CDD:238020 29/89 (33%)
FN3 1486..1555 CDD:238020 25/74 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4784
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9015
orthoMCL 1 0.900 - - OOG6_101656
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.690

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