DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and AgaP_AGAP004246

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_003436753.1 Gene:AgaP_AGAP004246 / 1274091 VectorBaseID:AGAP004246 Length:1967 Species:Anopheles gambiae


Alignment Length:1523 Identity:278/1523 - (18%)
Similarity:481/1523 - (31%) Gaps:508/1523 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   533 RLNVYGPPYVRAIG---PIKAVAGEDIIVHCPFA-GYPVEQIR-W----EKAHQE-------LTT 581
            ||:.|.|     ||   |...:|..|:.....|: |.|..:.. |    ...|::       :||
Mosquito    28 RLDYYPP-----IGNPAPNATIASRDVGDEIQFSNGLPGTRYNFWLYYTNSTHKDWLTWTVSITT 87

  Fly   582 SNH--YELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFP-- 642
            :..  ..|..:...|:.||.|..|.. ||.|:.......|    .......|....||..:|.  
Mosquito    88 APDPPANLTVIPRSGKNVIINWSPPA-QGNYSSFKLKILG----LSDNFATNQTVAIEDNQFQYM 147

  Fly   643 -KNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSIPSSLQITEK-----------KEEFYSLLVFK 695
             ::|..|...|:..         |..:...:|...:|...|.|           :.|...|::::
Mosquito   148 VRDLTPGATYQVQA---------YTLYDGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQ 203

  Fly   696 DISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTIT 760
              ....:|.||.|      ||:              .||.|.   ||:.:.:..|.|. |.|...
Mosquito   204 --PPYPAGIYTHY------KVS--------------IEPPDA---LGSVLYVQKEGEP-PGPAQA 242

  Fly   761 WFKGQGKG----------SKD-----------FKPLSMRNHSLLLNLATDND------------- 791
            .|||...|          |:|           ..||...|.:......|:|.             
Mosquito   243 AFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPMNVTFDKKSITENSFKVMWEAPKGTSE 307

  Fly   792 -EGYYMCQAT-----------NEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKG 844
             :.|.:..:|           ||..|.|:  .:.|::....::...:.:|.:    || ...|.|
Mosquito   308 FDKYQVSLSTSRRQQAVLRNDNENMAWLE--FKDNLDPGKTYQVVVKTVSGK----VT-SWPASG 365

  Fly   845 D---EP----------------ITIGW------TQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIG 884
            |   :|                |||.|      ||       :.:|.|..|::|..|..|.::..
Mosquito   366 DVTLKPLPVKQLQSYTDSKTGVITISWKPDELSTQ-------DEYRISYHELETNNGDSSTMSTN 423

  Fly   885 HSD---------RHDSGVYRCIAENPYGRAEQIIFLAVQERPDTP--SHLEIFEVGSRTVKLSWR 938
            .:.         |:.|...:.::...... |.:||  |..||.:|  ..|:....|   :.:||:
Mosquito   424 QTSFALESLLPGRNYSVTVQALSRKMESN-ETVIF--VVTRPSSPIIEDLKSIREG---LNISWK 482

  Fly   939 RPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWN-GHVINVSLPSTSISRSYDSDLRESAIVA 1002
            .  |.||....|.|.|              ...|.| |..:     .|:.||         .:..
Mosquito   483 S--DVNSKQDKYEVTY--------------TRNDTNDGKTV-----LTTESR---------LVFT 517

  Fly  1003 GLTPATTFLIRMQAINEIERS---AYTEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPR 1064
            .|.|...:.:::.|::...||   :|.:|:.        ...|.|:.::....:.::|.|:.|.|
Mosquito   518 NLYPGAGYEVKVFAVSHGLRSEPHSYFQAVY--------PNPPRNMTIEKVTSNSVLVHWKPPER 574

  Fly  1065 ESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSF 1129
            ..:....|.|  ....|||.|...||             ..|:|.:..:....:|.:.:      
Mosquito   575 SEFTEYSIRY--RTESEKQWIRLPSV-------------KATEADVTDMTPGEKYTIQV------ 618

  Fly  1130 GSGPWSAAIFGTTAEGVPEAAPQNVNCTA-----------LSSQSLK--------------ISW- 1168
                      .|.:.||....||.||.|.           :.|.::.              |.| 
Mosquito   619 ----------NTVSYGVESPNPQQVNQTVRPNPVSNIAPLVDSNNITLEFPRPEGRVETYIIHWW 673

  Fly  1169 -----------------LEPPL--QFHGGIIQGYKILYRPIVHQIDFP-----AKLEIKRTSNLE 1209
                             .:|||  ...|.::.|  ::|...:..|.:.     .||:.:....::
Mosquito   674 PTEQPEQVSMKNFTEVNTKPPLVRLLIGDLMSG--VMYNFKIQTISYGLTSDLTKLQTRTMPLIQ 736

  Fly  1210 TYLHTLHKASNYSIRVLAYTATGDGLASHPL--FCQTDDDVPDAPAAIKAAALTADSILISWLTP 1272
            :.:..::......:..|:||.|....:...|  |...|..:||..   |.|..|...:..:.|||
Mosquito   737 SEVVIVNNMHTRDMVTLSYTPTPQQSSKFDLYRFSLGDPSIPDKE---KLANDTDRKVTFTGLTP 798

  Fly  1273 KNRNGIISHYTVYSREAGRKGQAKTHMVRVDENGY--PVTFESRSLAENQMYEFWVSASTSVGEG 1335
                |.:.:.||::    ..|:..:..::..:..:  |:|.    |....:.:.|::....:.:|
Mosquito   799 ----GRLYNITVWT----VSGKVSSQPIQRQDRMFPDPITM----LEATSINDTWIALKWDIPKG 851

  Fly  1336 EPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVTFSPFYEVT 1400
            |.||...|                                        :|..|.  .:...|.|.
Mosquito   852 EYTSFEVQ----------------------------------------YLMNDS--HYVQNYTVN 874

  Fly  1401 NE---GNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPP---------SAPQIIVQYASA 1453
            |.   .:||.||       |||.|.....|::.   .|:.:..|         :.|..:.::|..
Mosquito   875 NHITITDLKPHR-------NYTITVVVRSGTES---SVLRVSLPISANFQTKEALPGRMDKFAPI 929

  Fly  1454 D----SIRVSWD-APDDGGAPLQGYTISYHTAG-ESWSITELLPENNAFTISGLKCGNQYIIKMS 1512
            |    .|...|. .|::....::.:||:|...| :...:.:..|.....:|..|:.|..|:.::.
Mosquito   930 DIQPSEITFEWSLPPNEQNGIIRQFTITYGLDGSQHTQVKDFRPNELRGSIKALQPGKSYVFRIQ 994

  Fly  1513 AHNMVGSGVASEEINVWTKGKASQAPNANEL------IATNATCVNLKLSSWQNGGCSIHHFSIE 1571
            |...:|.|..    ::|.:.....||...|.      :.::||.:.::...        |:||  
Mosquito   995 AKTAIGYGPE----HIWKQKMPILAPPKPETQVVPTEVGSSATTIEIRFRK--------HYFS-- 1045

  Fly  1572 HRPLGDIRWTVVTSDISNAEENRENLIFCDFLPAKWYQLRISATNDAGKTTE-HYHFSTTNIDGI 1635
                 |....|.|..|..||::.:|....: :|: |..::..:.....:..| :|.|..::::..
Mosquito  1046 -----DQNGVVTTYTIIIAEDDSKNASGLE-MPS-WRDVQSYSVWPPYQVIEPYYPFKNSSVEDF 1103

  Fly  1636 TIPPPSVFPSENDLMNNLINSTNP--------TSGDWFA-------------TLIVVVIITVSII 1679
            ||...:....:....|..:.|...        |:.|.|.             ...::|.|||.::
Mosquito  1104 TIGTENCDAKKTGYCNGPLKSGTTYKVKVRAFTAPDKFTDTAYSYPIRTAQDNTSLIVSITVPLL 1168

  Fly  1680 TIALTI---------KH------------------------RRTLCGPIAEGYESRTLPGDYKED 1711
            .||:.:         :|                        |..|....||.|...:...|::..
Mosquito  1169 IIAMLVGVVLFLRRRRHTGRKTTEQRTNDNMSLPDSTIETSRPVLVKNFAEHYRMMSADSDFRFS 1233

  Fly  1712 HENRRNQQVYSASPVKTVDKGNESEMYEISPYATFSVNGGRTGAPAKTPTRAVAAQTPLDYT-MQ 1775
            .|....:.:....|....|                        .|...|........|.|:: .:
Mosquito  1234 EEFEELKHIGRDQPCTFAD------------------------LPCNRPKNRFTNILPYDHSRFK 1274

  Fly  1776 FKTFGHPEGEN-LNATAYPLLPSSGFGH 1802
            .:.....||.: :||...|       ||
Mosquito  1275 LQPVDDEEGSDYINANYVP-------GH 1295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 278/1523 (18%)
IGc2 553..619 CDD:197706 17/80 (21%)
I-set 634..724 CDD:254352 19/103 (18%)
ig 645..712 CDD:278476 14/77 (18%)
IG_like 734..815 CDD:214653 25/126 (20%)
Ig 745..815 CDD:299845 21/115 (18%)
I-set 820..913 CDD:254352 24/126 (19%)
Ig 838..920 CDD:299845 24/115 (21%)
FN3 917..1033 CDD:238020 25/121 (21%)
FN3 1040..1142 CDD:238020 17/101 (17%)
fn3 1150..1237 CDD:278470 21/136 (15%)
FN3 1263..1345 CDD:238020 16/83 (19%)
Ig 1350..1436 CDD:299845 14/88 (16%)
IG_like 1358..1436 CDD:214653 14/80 (18%)
FN3 1441..1530 CDD:238020 19/103 (18%)
FN3 1542..1620 CDD:238020 15/83 (18%)
AgaP_AGAP004246XP_003436753.1 FN3 89..170 CDD:214495 18/94 (19%)
fn3 185..269 CDD:278470 23/109 (21%)
fn3 280..357 CDD:278470 11/78 (14%)
FN3 371..451 CDD:214495 15/86 (17%)
fn3 477..541 CDD:278470 19/93 (20%)
FN3 549..637 CDD:238020 24/118 (20%)
fn3 649..717 CDD:278470 9/69 (13%)
fn3 751..817 CDD:278470 19/76 (25%)
fn3 827..897 CDD:278470 22/122 (18%)
fn3 929..1005 CDD:278470 16/79 (20%)
PTPc 1232..1485 CDD:214550 14/95 (15%)
PTPc 1258..1485 CDD:238006 10/45 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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