DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Cntn4

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_446331.1 Gene:Cntn4 / 116658 RGDID:621361 Length:1026 Species:Rattus norvegicus


Alignment Length:1604 Identity:309/1604 - (19%)
Similarity:484/1604 - (30%) Gaps:654/1604 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LAVLATPLLATSG---LRVPTFLLEPAPRLLFGNDT---GAQVTCTAHGSPPPLVTWVLR----- 75
            |.||.:.:|..:.   |..|.|:.||: .::|..|:   ..:::|...|:|.|.:.|.|.     
  Rat     7 LLVLQSFMLCLADDYTLHGPVFVQEPS-HVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD 70

  Fly    76 ----------DGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNV 130
                      :|||....|...:.||                     ||:|.|:|..||::||..
  Rat    71 IGMDFRYSVVEGSLLINNPNKTQDSG---------------------TYQCIATNSFGTIVSREA 114

  Fly   131 QVHAVVRRQFHVHVENT-EVYLGNSALIKCAIPEY--VRPYVRVASWHRGEEILLPDLSDVAGRY 192
            ::.......|.....:| .|..|...::.|..|.:  ...|..:.:.|       |...|  .|.
  Rat   115 KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEH-------PSYQD--NRR 170

  Fly   193 VVLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGER---------QRSDAVMLQVKELSKNLAPRT 248
            .|...:|:||:..|...| :..::|:||||:...:         .|:|.||.:.:...:...|.|
  Rat   171 FVSQETGNLYIAKVEKAD-VGNYTCVVTNTVTSHQVLGPPTPLILRNDGVMGEYEPKIEVQFPET 234

  Fly   249 TQKPVMEIHVERGNDVHLPCNIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADER 313
                   :..|:|:.|.|.|...|||.|...|.|....    ||....|...|..:|.|.|..:.
  Rat   235 -------VPAEKGSTVKLECFALGNPVPTILWRRADGK----PIARKARRHKSSGILEIPNFQQE 288

  Fly   314 DAGKWICQASNQFGEQRIEIRLSVNSYVSVHILPQ-VQIVNSGGTANFNCTTTGSAIDAIDWLHN 377
            |||.:.|.|.|..|:.      .....|:.:..|. |||:|.                       
  Rat   289 DAGSYECVAENSRGKN------IAKGQVTFYAQPNWVQIIND----------------------- 324

  Fly   378 GKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELI 442
                                                                            |
  Rat   325 ----------------------------------------------------------------I 325

  Fly   443 YTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNIS 507
            :..:|::|      ..:|.|:|.|.|.:.||.:..|::   ...|..|.|         ..|||:
  Rat   326 HVAMEESV------FWECKANGRPKPTYRWLKNGDPLL---TRERIQIEQ---------GTLNIT 372

  Fly   508 HVRPDDGGLYKCVASNSMGSVQHSARLNVY--GPPYVRAIGPIKAV----AGEDIIVHCPFAGYP 566
            .|...|.|:|:|||.|..|.:..||.|:|.  .|.:.|.:  :|.|    .|.::::.|.....|
  Rat   373 IVNLSDAGMYQCVAENKHGVIYASAELSVIAESPDFSRTL--LKRVTLVKVGGEVVIECKPKASP 435

  Fly   567 VEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVN 631
            .....|.|. :|:...|  |..::::.|.|.|.||... |.|.||||..:..|            
  Rat   436 RPVYTWRKG-REILREN--ERITISEDGNLRIINVTKS-DAGSYTCIATNHFG------------ 484

  Fly   632 SPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDSSI---PSSLQITEKKEEFYSLLV 693
                                   .|.|:|::.:     ||.:.:   |||:.:|           
  Rat   485 -----------------------TASSTGNVVV-----KDPTKVMVPPSSMDVT----------- 510

  Fly   694 FKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPT 758
                                                           :|.:|.:.|:.       
  Rat   511 -----------------------------------------------VGESIVLPCQV------- 521

  Fly   759 ITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQ 823
                              ..:|||                                         
  Rat   522 ------------------THDHSL----------------------------------------- 527

  Fly   824 SARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDS--QLTIGHS 886
                                   .|...||.|...||   |.......:...|.||  .|.|.:.
  Rat   528 -----------------------DIVFTWTFNGHLID---FDKDGDHFERVGGQDSAGDLMIRNI 566

  Fly   887 DRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYL 951
            ....:|.|.|:.:....:......|.|:..|..|..:.|.|:...|.:||||...|.:||:..|:
  Rat   567 QLKHAGKYVCMVQTSVDKLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHSPITMYV 631

  Fly   952 VQ--------YQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPAT 1008
            :|        :||:.                      ::|.....:::      :|.|.||.|..
  Rat   632 IQARTPFSVGWQAVS----------------------TVPELVDGKTF------TATVVGLNPWV 668

  Fly  1009 TFLIRMQAINEI---ERSAYTEAIVLKTQEEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGE 1070
            .:..|..|.|.|   |.|..:|.  .:|:|..|...|:||....|.:|||::||:..|.|..||.
  Rat   669 EYEFRTVAANVIGIGEPSRPSEK--RRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGR 731

  Fly  1071 LIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRKYSRYAVTIRAMNSFGSGPWS 1135
            ..||.|......:.|..::|:.|:..|..|       .....:|.:|.:.|.:...|:.|.||:|
  Rat   732 GFGYVVAFRPHGKMIWMLTVLASADASRYV-------FRNESVRPFSPFEVKVGVFNNKGEGPFS 789

  Fly  1136 AAIFGTTAEGVPEAAPQNVNCTALSSQSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFPAKL 1200
            ......:||..|...|.::...:||:..:::.|.. |:..:.|.||||::.|             
  Rat   790 PTTLVYSAEEEPTKPPASIFARSLSATDIEVFWAS-PIGKNRGRIQGYEVKY------------- 840

  Fly  1201 EIKRTSNLETYLHTLHKASNYSIRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSI 1265
                      :.|                                ||..:....|          
  Rat   841 ----------WRH--------------------------------DDKEENARKI---------- 853

  Fly  1266 LISWLTPKNRNGIISHYTVYSREAGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSAST 1330
                                 |..|.:...|            :|    :|..|.:|...|.|..
  Rat   854 ---------------------RTVGNQTSTK------------IT----NLKGNALYHLSVKAYN 881

  Fly  1331 SVGEGEPTSVIAQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDRPVTFSP 1395
            |.|.| |:|.....| ||.|                                             
  Rat   882 SAGTG-PSSAAVNVT-TRKP--------------------------------------------- 899

  Fly  1396 FYEVTNEGNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYASADS-IRVS 1459
                                                        |||.|...:.:.|:|| |.::
  Rat   900 --------------------------------------------PPSQPPGNIIWNSSDSKIILN 920

  Fly  1460 WDAPD--DGGAPLQGYTISYHTAGESW---SITELLPENNAFTISGLKCGNQYIIKMSAHNMVGS 1519
            ||...  |..:.::||.:.|.     |   |.|.::..|.......|.....|||::...:..|.
  Rat   921 WDQVKALDNESEVKGYKVLYR-----WNRQSSTSVIETNKTSVELSLPFDEDYIIEIKPFSDGGD 980

  Fly  1520 GVASEEI------NVWTKGKASQAPNANELIATNATCVNLKLSS 1557
            |.:||:|      |.:.:|..:...||..|.|.:...::|...|
  Rat   981 GSSSEQIRIPKISNSYARGSGASTSNACTLSAISTIMISLTARS 1024

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 21/91 (23%)
Ig 56..125 CDD:143165 18/83 (22%)
I-set 246..337 CDD:254352 27/90 (30%)
Ig 264..334 CDD:143165 23/69 (33%)
I-set 345..433 CDD:254352 5/88 (6%)
Ig 358..431 CDD:143165 0/72 (0%)
Ig 456..533 CDD:143165 24/76 (32%)
IGc2 553..619 CDD:197706 19/65 (29%)
I-set 634..724 CDD:254352 9/92 (10%)
ig 645..712 CDD:278476 9/69 (13%)
IG_like 734..815 CDD:214653 6/80 (8%)
Ig 745..815 CDD:299845 5/69 (7%)
I-set 820..913 CDD:254352 16/94 (17%)
Ig 838..920 CDD:299845 18/83 (22%)
FN3 917..1033 CDD:238020 29/126 (23%)
FN3 1040..1142 CDD:238020 29/101 (29%)
fn3 1150..1237 CDD:278470 12/86 (14%)
FN3 1263..1345 CDD:238020 14/81 (17%)
Ig 1350..1436 CDD:299845 1/85 (1%)
IG_like 1358..1436 CDD:214653 0/77 (0%)
FN3 1441..1530 CDD:238020 27/100 (27%)
FN3 1542..1620 CDD:238020 4/16 (25%)
Cntn4NP_446331.1 Ig 25..114 CDD:299845 27/110 (25%)
I-set 26..117 CDD:254352 27/112 (24%)
Ig 120..213 CDD:299845 22/102 (22%)
IG_like 130..204 CDD:214653 21/83 (25%)
Ig 225..313 CDD:299845 28/104 (27%)
IG_like 232..311 CDD:214653 27/95 (28%)
I-set 316..401 CDD:254352 34/189 (18%)
Ig 318..401 CDD:299845 33/187 (18%)
IG_like 415..494 CDD:214653 24/117 (21%)
Ig5_Contactin_like 422..494 CDD:143170 23/110 (21%)
IG_like 504..593 CDD:214653 26/238 (11%)
Ig6_Contactin-4 513..597 CDD:143261 22/175 (13%)
FN3 597..690 CDD:238020 28/120 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 685..710 8/26 (31%)
FN3 703..792 CDD:238020 29/95 (31%)
FN3 804..896 CDD:238020 30/196 (15%)
FN3 904..989 CDD:238020 24/89 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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