DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and Psg25

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_473401.1 Gene:Psg25 / 114868 MGIID:1891357 Length:475 Species:Mus musculus


Alignment Length:463 Identity:101/463 - (21%)
Similarity:168/463 - (36%) Gaps:128/463 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   547 PIKAVAGEDIIVHCPFAGYPVEQ----IRWEKA---------------HQELTTSNHYELASVAD 592
            |::.|.||::::|.    |.:.:    :.|.:.               :..:|...|....::..
Mouse    42 PLQVVEGENVLLHV----YNLPENLLGLAWYRGLLNLKLGIALYSLQYNVSVTGPEHSGRETLHR 102

  Fly   593 GGQLVIKNVEPGRDQGIYTCIVRSRAGE-EARRDMQLNVNSPPVI--EPFKFPKNLQEGGRAQIT 654
            .|.|.|:||.. .|.|.||....|:.|: |:...|.|.|.|...|  .|| ||..|.   ...:.
Mouse   103 NGSLWIQNVTQ-EDTGYYTLRTISKNGKLESNTSMFLQVYSSTFICGHPF-FPAKLT---IESVP 162

  Fly   655 CAVSSG--------DMPIYFS---WKK----------------DDSSIPSSLQITEKKEEFYS-- 690
            .:|::|        ::|.:..   |.|                .:||.|....  ..:|..||  
Mouse   163 PSVAAGGSVLLRVHNLPEHLQSLFWYKGLIVFNKVEIARYRTAKNSSEPGHAH--SGRETVYSNG 225

  Fly   691 LLVFKDISARHSGKYTCYASNAAAKVNYT-------------------AELQVRVAPRWRYEPMD 736
            .|:.:|::.:.:|.||....|...|:...                   |:|.:...||:..|   
Mouse   226 SLLLQDVTWKDTGFYTLRTLNRYRKMKLAHIYLQVDTPLSLCCDTLDFAQLSIDPVPRYAVE--- 287

  Fly   737 TAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFK----------PLSMRNH----------S 781
                 |.::.:........:.|.:|:||. ..:..||          .:|.|.|          |
Mouse   288 -----GGSVLLQVHNLPEDLQTFSWYKGV-HNTHGFKIAEYSIATKSIISGRAHSRREIGYTDGS 346

  Fly   782 LLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVN----EP-ARFEQSARNISSRRNDPVTLDCH 841
            |||...|:.|.|.|...|.:.....::..:::||:    :| .|...:...:.|    .|...|.
Mouse   347 LLLQDVTEKDSGLYTLIAIDSNVRVVRAHVQVNVHKLVTQPVVRVTDTTVRVQS----SVVFTCF 407

  Fly   842 AKGDEPITIGWTQNNGRIDLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAE 906
            :.... |:|.|..||..:.|.. |.:::..|      .||.|....:.|:|.|:|.|.||.....
Mouse   408 SDNTR-ISIRWLFNNQNLQLTE-RMTLSPSK------CQLRIHTVRKEDAGEYQCEAFNPVSSKT 464

  Fly   907 QI-IFLAV 913
            .: :.|||
Mouse   465 SLPVSLAV 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706 17/84 (20%)
I-set 634..724 CDD:254352 26/139 (19%)
ig 645..712 CDD:278476 17/95 (18%)
IG_like 734..815 CDD:214653 19/100 (19%)
Ig 745..815 CDD:299845 18/89 (20%)
I-set 820..913 CDD:254352 23/93 (25%)
Ig 838..920 CDD:299845 22/77 (29%)
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Psg25NP_473401.1 Ig_CEACAM_D1 36..140 CDD:143251 23/102 (23%)
IG_like 42..140 CDD:214653 23/102 (23%)
Ig_CEACAM_D1 156..260 CDD:143251 19/108 (18%)
Ig_CEACAM_D1 276..380 CDD:143251 23/112 (21%)
IG_like 280..380 CDD:214653 22/108 (20%)
IG_like 393..472 CDD:214653 22/90 (24%)
IGc2 400..461 CDD:197706 21/72 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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