DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam3 and pigrl3.5

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:NP_001293027.1 Gene:pigrl3.5 / 105665598 ZFINID:ZDB-GENE-150409-6 Length:368 Species:Danio rerio


Alignment Length:321 Identity:70/321 - (21%)
Similarity:101/321 - (31%) Gaps:104/321 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   482 VSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNS---------MGSVQHSARLNVY 537
            |.||    ||     :|..|..|||. |:....|:..|:....         .|....|..:..:
Zfish    10 VLLH----IG-----NGAWIDKLNIG-VKSGSPGIIPCLYKEQYKENHKYWCQGMFWSSCTILAF 64

  Fly   538 GPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQI---RWEKAHQELTTSNHYELASVADGGQLVIK 599
            |.      ||....:         ...||.:.|   :|:                          
Zfish    65 GN------GPRSKFS---------ITYYPAQSIFTVKWQ-------------------------- 88

  Fly   600 NVEPGRDQGIYTCIVRSRAGE----EARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSG 660
            |::|. |.|.|.|.|  ..|:    :||..:.|.|...|.:.......:..|||...:.|..||.
Zfish    89 NLQPS-DSGYYWCAV--EIGDSGIPDARYYLYLKVQPVPDVSVKSSSVSGHEGGNVSVQCFYSSE 150

  Fly   661 DMPIYFSW-----------KKDDSSIPSSLQITEKKEEFYSLLV----FKDISARHSGKYTCYAS 710
            .......|           :|.|:|...|:||::..|..:::|:    |.|     ||.|.|...
Zfish   151 YHNKLKGWCRVKDKRCFKEEKTDTSQNPSVQISDDGESSFTVLMAELRFSD-----SGWYFCSVG 210

  Fly   711 NAAAKVNYTAELQVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGSKD 771
            :....|..|..         :.|| ..|:..|:......|..    ||.......||.|||
Zfish   211 DLQVPVRLTVT---------KPEP-KAAMTTGSRPKSRVEDP----PTTDSEINMGKDSKD 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165 15/59 (25%)
IGc2 553..619 CDD:197706 11/68 (16%)
I-set 634..724 CDD:254352 24/104 (23%)
ig 645..712 CDD:278476 21/81 (26%)
IG_like 734..815 CDD:214653 11/38 (29%)
Ig 745..815 CDD:299845 8/27 (30%)
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
pigrl3.5NP_001293027.1 IG_like 27..103 CDD:214653 19/119 (16%)
Ig 35..105 CDD:299845 17/113 (15%)
Ig 135..219 CDD:299845 22/88 (25%)
IG_like 137..220 CDD:214653 22/87 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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