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Protein Alignment Dscam3 and si:ch211-241b2.5

DIOPT Version :9

Sequence 1:	NP_996226.2	Gene:	Dscam3 / 42103	FlyBaseID:	FBgn0261046	Length:	2087	Species:	Drosophila melanogaster
Sequence 2:	XP_009293364.2	Gene:	si:ch211-241b2.5 / 100536137	ZFINID:	ZDB-GENE-081104-192	Length:	760	Species:	Danio rerio

Alignment Length:	250	Identity:	56/250 - (22%)
Similarity:	92/250 - (36%)	Gaps:	72/250 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   430 AELKLGDTVPELIY---------TFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMD--VS 483
            |||. ||...|.::         |.|...|.|.|.:::            .||...:.|.:  .|
Zfish   299 AELN-GDVRLECVFSALKRSSDITVIWSRVHPKPDVNI------------YWLDKGKEIHNHTSS 350

  Fly   484 LHHRFAIGQFVDMSGDVISH--------LNISHVRPDDGGLYKCVASNSMGSVQH-SARLNVYGP 539
            ..|:.|         .:|||        |::..:|..|.|.|:|:....  .|.: ...|||..|
Zfish   351 AFHKRA---------QLISHLLRENRAVLHLKKLRIKDSGTYQCIVEGD--EVDYKQITLNVTAP 404

  Fly   540 PYVRAIGPIK---AVAGED-IIVHCPFAGYPVEQIRWEKAHQ-ELTTSNHYELASVADGGQLVIK 599
                 ..|::   ..|||| :.:.|...|:|..|:.|....: .||..::..::|..:...|::.
Zfish   405 -----FSPVRKSLRKAGEDEVELSCESQGFPSAQVYWSDGQKLNLTLFSNTSVSSTDEDLILIVS 464

  Fly   600 NVEPGRD-QGIYTC--IVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRA 651
            .::..|: ...|||  ||:....:.|               .|..|:.:...|.|
Zfish   465 KLKVERELVNNYTCTFIVKGEIQQTA---------------TFSIPEEIPLHGSA 504

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.