DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam3 and dscaml1

DIOPT Version :9

Sequence 1:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster
Sequence 2:XP_004916122.1 Gene:dscaml1 / 100491996 XenbaseID:XB-GENE-922538 Length:2043 Species:Xenopus tropicalis


Alignment Length:2153 Identity:614/2153 - (28%)
Similarity:956/2153 - (44%) Gaps:325/2153 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LAVLATPLLA------TSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSLA 80
            |::|.:..||      ||...|.|.||:    :.|.:..|..:.|.|.|||...:.|.|..|...
 Frog     6 LSLLCSVHLAHLEDAGTSLYFVNTSLLQ----ITFSSTVGVFIPCPAAGSPSATLRWYLGTGDDI 66

  Fly    81 TQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHAVVRRQFHVHVE 145
            ..||.:|.:..||||...||....:.:.:|:..|.|.|.|.||.:.|.|::|.||.|..:.|.||
 Frog    67 YDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENSAGKIRSPNIRVKAVFREPYTVRVE 131

  Fly   146 NTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDLYVRSVRSED 210
            :.....|::|:.||..|..|:.||.|.||.:....|..:     ||:|. :.||.||:..|:.||
 Frog   132 DQRAMRGSAAVFKCLTPPSVQEYVSVVSWEKDTVSLTSE-----GRFVT-SPSGALYILDVQKED 190

  Fly   211 GLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVM-------EIHVERGNDVHLPC 268
            .|..:.|:..:..:||.::|:...|.|.:.::::       ||:       |..|  |..|.|||
 Frog   191 ALSTYRCITRHRYSGETRQSNGARLLVSDPAESV-------PVLLDGFQSQEALV--GETVELPC 246

  Fly   269 NIQGNPFPIFTWYRVSDSAALYPIPSSQRVILSRTLLLIKNADERDAGKWICQASNQFGEQRIEI 333
            ...|.|.....|  :.|..   |:||..|.....|.|.:.:....|:|.:||:.:|.||...:..
 Frog   247 IASGYPNLASRW--IKDGR---PVPSDSRWSKRSTGLSMADLRLEDSGTYICEITNSFGSAEVTG 306

  Fly   334 RLSVNSYVSVHILPQVQIVNSGGTANFNCTTTGSAIDAIDWLHNGKPLQANNALT-TGRDNIRFL 397
            .|:|...:.|.:.|:......|.|...:|:.:||....:.|..|.:.::|:..:: .|.||    
 Frog   307 TLTVIEPLRVTLSPKKLKTGIGSTVILSCSLSGSPGYIVRWYRNTEHIEADEFISIRGADN---- 367

  Fly   398 SKSSLLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFIEQNVRPGPLISLKCSA 462
              .:|::.:..:...|.|||....::.:||..|.:.|.|..|.::.:|.|:.:.||...||.|||
 Frog   368 --ETLVISSAQKSHSGAYQCFGTRKKQTAQDFAIVVLEDGTPRILSSFSEKVMNPGEQFSLMCSA 430

  Fly   463 SGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGS 527
            .|:|||...|.||.:||...|.|..   .|:....|..:|::|:|..:..|||:|:|.|.||:||
 Frog   431 KGAPPPTITWTLDDEPIQRDSGHRS---NQYTTADGSTVSYMNVSSPQILDGGVYRCAARNSVGS 492

  Fly   528 VQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVAD 592
            .::.||:||.|||.:|.:..:.||||.|..:||...|||...|.|.| ...|...||.::  |.:
 Frog   493 AEYQARINVRGPPSIRPMKNLTAVAGRDSFIHCRVIGYPYYFISWYK-DSLLLPDNHRQV--VFE 554

  Fly   593 GGQLVIKNVEPGRDQGIYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAV 657
            .|.|::.:|:.|.|:|.|.|.|..:......:.:.:.|..||:|:||:||. ...|....|.|.|
 Frog   555 NGTLMLSDVQKGMDEGEYLCSVLIQPQLSISQSVHVTVKVPPLIQPFEFPP-ASIGQLLYIPCVV 618

  Fly   658 SSGDMPIYFSWKKDDSSIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAEL 722
            |||||||..:|:||...|.|...||.:.:||.|.|....:|.:|:|.|||.|||.||.|:...:|
 Frog   619 SSGDMPIRITWRKDGQVIVSGSGITIETKEFMSSLQISSVSLKHNGNYTCIASNDAATVSRERQL 683

  Fly   723 QVRVAPRWRYEPMDTAIMLGNTISINCEAEGYPIPTITWFKGQGKGS-KDFKPLSMR-------N 779
            .|||.||:..:|.:...:.|....:||..:|||.|.:.|...:|.|: :.:.|:.:.       |
 Frog   684 IVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVVWKHAKGSGNPQQYHPVPLTGRIQILPN 748

  Fly   780 HSLLLNLATDNDEGYYMCQATNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKG 844
            .|||:....:.|.|||:|||:|.:|..:.|::.:.|..||..........:.:.....|:|.|:|
 Frog   749 SSLLIRHVLEEDIGYYLCQASNGVGTDISKSMFLTVKIPAMITSHPNTTIAIKGQTKGLNCTARG 813

  Fly   845 DEPITIGWTQNNGRIDLN-NFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQI 908
            :.||.|.|.:.:..||.: |.|:.||...:...|.|.||:..::|.||..:.|.|.|.||....:
 Frog   814 ERPIIIRWEKGDTVIDPDRNLRYLIATKDSGDEVISTLTLKPAERGDSVFFSCHAINSYGEDRGL 878

  Fly   909 IFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQYQ----ALKYLQSHGSLAAA 969
            |.|.|||.|| |..||:.||.:|::.|.|.:.|||||.:.::.::|:    :.::.||..:::. 
 Frog   879 IQLTVQEPPD-PPELEVREVKARSMNLRWTQRFDGNSIITAFDIEYKNKSDSWEFKQSTRNISP- 941

  Fly   970 GGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQ 1034
                   :||                  .|.:..|.||:.:.|||.:.|:|.||..::.:.:.|:
 Frog   942 -------IIN------------------QANIVDLHPASVYSIRMYSFNKIGRSEPSKELTISTE 981

  Fly  1035 EEAPTEAPSNVQVQTGGESELIVTWQIPPRESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTI 1099
            |.||...|.:|.:|......:.|||:.|.:|..||.:.||.:...|...        .|:.:.:|
 Frog   982 EAAPDGPPMDVTLQPLTSQSIQVTWKAPRKELQNGVIRGYQIGYRENGP--------GSNGQYSI 1038

  Fly  1100 VSGWATTKA---TLRGLRKYSRYAVTIRAMNSFGSGPWSAAIFGTTAEGVPEAAPQNVNCTALSS 1161
            |...||..|   ||..::|:::|.|.::|.|..|:||.|..|..||.|.||...|:||...:::|
 Frog  1039 VEMKATGDAEVYTLDNMKKFAQYGVVVQAFNRAGTGPSSTEINATTLEDVPSKPPENVRVLSITS 1103

  Fly  1162 QSLKISWLEPPLQFHGGIIQGYKILYRPIVHQIDFP----AKLEIKRTSNLETYLHTLHKASNYS 1222
            ....|||.|||.....|:::||::::..:     :|    .:::...|......|.:|.|.::||
 Frog  1104 DVAVISWSEPPRNSLNGVLKGYRVIFWSL-----YPDGEWGEMQNITTPRERVELKSLEKFTDYS 1163

  Fly  1223 IRVLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTVYSR 1287
            ::|||||..|||:.|..|:.||.:|:|..||.|||.:.::.|:::|||.|...||||..||::..
 Frog  1164 VQVLAYTQAGDGVRSDVLYLQTKEDIPGPPAGIKAVSSSSSSVVVSWLPPTKPNGIIRKYTIFCS 1228

  Fly  1288 EAGRKGQAKTHMVRVDENGYPVTFESRS-----------LAENQMYEFWVSASTSVGEGEPTSVI 1341
            ..|              :|.|...|..:           |...|.|..||:|.||.|.|..:..:
 Frog  1229 SPG--------------SGQPAPSEYETSPEFLHYRIMHLLRGQQYMLWVAAVTSAGRGNFSEKV 1279

  Fly  1342 AQATNTRAPARIASFGQVVRKAVGTGLVLECLAVGNPTPRARWLTRDR-----PVTFSPFYEVTN 1401
            ......:|||:|.|||..|.......:.|.|.:||.|.|..:| |:|.     ||.......:.:
 Frog  1280 MIEPAGKAPAKIISFGGTVSTPWMKDVRLPCSSVGEPAPAIKW-TKDSEDSAIPVALDGHRLIHS 1343

  Fly  1402 EGNLKIHRVEGSLSGNYTCTANNLFGSDEIQYQVIAMKPPSAPQIIVQYASADSIRVSWDAPDDG 1466
            .|.|.:..|:...||.|||||.|.:|.|.|...::...||..|::.|...||.||.::|...|:|
 Frog  1344 NGTLTLRSVKAEDSGYYTCTATNTWGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLAWIPGDNG 1408

  Fly  1467 GAPLQGYTISYHT-AGESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVGSGVASEEINVWT 1530
            |:.::|:.:.|.. ..|.|....:.....:|.:..|:||..|.:|::|.|.||:|..||.|...|
 Frog  1409 GSSIRGFVLQYSVDNSEEWRDVFISSSERSFRLENLRCGTWYKVKLAAKNSVGAGRISEIIEAKT 1473

  Fly  1531 KGKASQAPNANE----LIATNATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAE 1591
            .|:   .|:.|:    ....|:|...|.|..|.:|||.|....:|:||.....|..:.:::::  
 Frog  1474 HGR---EPSFNKDQPLFTHVNSTHARLNLHGWNSGGCPITSVILEYRPQNTWPWQSLRANVTS-- 1533

  Fly  1592 ENRENLIFCDFLPAKWYQLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVFPSENDLMNNLINS 1656
                ::...:...|.||:|::.|.|.||...|...|:|.:.||.||||......|.|.:..|.:.
 Frog  1534 ----DVFLTELREATWYELKMRACNSAGCGNETSRFATLDYDGSTIPPIKSAQGEGDDVKKLFSI 1594

  Fly  1657 TNPTSGDWFATLIVVVIITV---------------SIITIALTIKHRRTLCGPI----------- 1695
            .:|..   .|||.|.::..:               ..:...|..|:.|:...|:           
 Frog  1595 ASPVI---LATLGVALLFIIRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPAGPRLHI 1656

  Fly  1696 -----------AEGYESRTLPGDYK-------EDHENRRNQQVYSAS-----PVKTVDKGNESEM 1737
                       .||.  :.|.||.|       .:.....|.|.:...     |....:.|...:|
 Frog  1657 DIPRVQLLIEDKEGV--KQLAGDDKATLPVTDAEFSQTVNPQSFCTGVSLHHPALIQNTGPLIDM 1719

  Fly  1738 YEISP-------------YAT---FSVNGGRTGAPAKTPTRAVAAQTPLDYTMQFKTFGHPEG-- 1784
            .:|.|             ::|   :|.....|...:.||.|.:        |..::|.|...|  
 Frog  1720 SDIRPGTNPVSRKSVKSAHSTRNRYSSQWTLTKCQSSTPARTL--------TSDWRTVGSQHGIT 1776

  Fly  1785 -------------------------ENLNATAYPLLPSSGFGHVKSKSSWHKQRYYNTEDESTLS 1824
                                     |:.::|...|  :..:.|.|.:......::..||...:.|
 Frog  1777 VTESDSYSASLSQDTDKGRNSMVSTESASSTYEEL--ARAYEHAKLEEQLQHAKFEITECFISDS 1839

  Fly  1825 KSMTIVAG-SQAGHSKKSNGGRSAKSSAACSGVVAGSESDTSISPS------------TEFSNMP 1876
            .|..:..| ::.|.|..|   .|..|........|.........|:            :|:.|:|
 Frog  1840 SSDQMTTGTNENGDSMTS---MSTPSEPGICRFTASPPKPQDSDPTKNVAVPIPHRAKSEYCNLP 1901

  Fly  1877 TYRVPCKSSRSSDGRAVVDMFRPDSSTESNNDQ------------GSPAPERRHNTPRHVLGMGM 1929
            .|.......|..|......:..|..::..|.::            ..|.|...|.||..|.....
 Frog  1902 LYMKSEPHFRKPDPHDSCPVVPPREASMRNLNRSYHSRHLTLEPGAKPPPGLSHPTPSGVSLPQR 1966

  Fly  1930 AMGLGGGGGGGVGG--------------GNGPAEKR--------------------SAGQRSRKH 1960
            .:.|.|........              ..||.|.|                    |.|.|::|.
 Frog  1967 TLLLAGASASAPSAPAATAPSAPADPTPSVGPVENRLPTQHSKMGGSRDSLLEMSSSGGSRAQKQ 2031

  Fly  1961 GSAAQQPS 1968
            |:.|...|
 Frog  2032 GAGAYSKS 2039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam3NP_996226.2 IG 56..133 CDD:214652 26/76 (34%)
Ig 56..125 CDD:143165 24/68 (35%)
I-set 246..337 CDD:254352 27/97 (28%)
Ig 264..334 CDD:143165 21/69 (30%)
I-set 345..433 CDD:254352 20/88 (23%)
Ig 358..431 CDD:143165 16/73 (22%)
Ig 456..533 CDD:143165 31/76 (41%)
IGc2 553..619 CDD:197706 23/65 (35%)
I-set 634..724 CDD:254352 41/89 (46%)
ig 645..712 CDD:278476 30/66 (45%)
IG_like 734..815 CDD:214653 26/88 (30%)
Ig 745..815 CDD:299845 24/77 (31%)
I-set 820..913 CDD:254352 28/93 (30%)
Ig 838..920 CDD:299845 33/82 (40%)
FN3 917..1033 CDD:238020 31/119 (26%)
FN3 1040..1142 CDD:238020 31/104 (30%)
fn3 1150..1237 CDD:278470 28/90 (31%)
FN3 1263..1345 CDD:238020 25/92 (27%)
Ig 1350..1436 CDD:299845 32/90 (36%)
IG_like 1358..1436 CDD:214653 26/82 (32%)
FN3 1441..1530 CDD:238020 29/89 (33%)
FN3 1542..1620 CDD:238020 20/81 (25%)
dscaml1XP_004916122.1 Ig 42..113 CDD:319273 24/70 (34%)
Ig 128..217 CDD:386229 31/94 (33%)
I-set 232..310 CDD:369462 25/84 (30%)
IG_like 328..388 CDD:214653 16/65 (25%)
Ig_3 407..488 CDD:372822 32/83 (39%)
Ig 504..574 CDD:386229 27/72 (38%)
Ig 614..680 CDD:319273 33/65 (51%)
Ig_DSCAM 706..784 CDD:143211 24/77 (31%)
Ig 802..890 CDD:386229 33/88 (38%)
FN3 886..980 CDD:238020 31/120 (26%)
FN3 987..1084 CDD:238020 31/104 (30%)
FN3 1092..1185 CDD:238020 30/97 (31%)
FN3 1190..1281 CDD:238020 31/104 (30%)
IGc2 1305..1369 CDD:197706 22/64 (34%)
FN3 1383..1473 CDD:238020 29/89 (33%)
FN3 1487..1563 CDD:238020 22/81 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4848
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9434
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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